HL_7OSM_123

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

7OSM|1|18S|U|1057, 7OSM|1|18S|U|1058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_123 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2051

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7OSM|1|18S|U|1055
7OSM|1|18S|U|1056
7OSM|1|18S|U|1057
7OSM|1|18S|U|1058
7OSM|1|18S|U|1059
7OSM|1|18S|U|1060
7OSM|1|18S|A|1061
7OSM|1|18S|A|1062
7OSM|1|18S|U|1063
7OSM|1|18S|G|1064

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS1

40S ribosomal protein S1

Chain eS27

40S ribosomal protein S27-A