HL_7OSM_127
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 7OSM|1|58S|C|83, 7OSM|1|58S|C|84, 7OSM|1|58S|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OSM_127 not in the Motif Atlas
- Homologous match to HL_8P9A_187
- Geometric discrepancy: 0.3362
- The information below is about HL_8P9A_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_51921.1
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7OSM|1|58S|U|69
7OSM|1|58S|G|70
7OSM|1|58S|A|71
7OSM|1|58S|A|72
7OSM|1|58S|U|73
7OSM|1|58S|U|74
7OSM|1|58S|G|75
7OSM|1|58S|C|76
7OSM|1|58S|A|77
7OSM|1|58S|G|78
7OSM|1|58S|A|79
7OSM|1|58S|A|80
7OSM|1|58S|U|81
7OSM|1|58S|U|82
7OSM|1|58S|C|83
7OSM|1|58S|C|84
7OSM|1|58S|G|85
7OSM|1|58S|U|86
7OSM|1|58S|G|87
7OSM|1|58S|A|88
7OSM|1|58S|A|89
Current chains
- Chain 58S
- 5.8S rRNA
Nearby chains
- Chain 25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain eL37
- Ribosomal protein L37
- Chain eL39
- 60S ribosomal protein L39
- Chain uL24
- 60S ribosomal protein L26-A
- Chain uL29
- BJ4_G0044250.mRNA.1.CDS.1
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