HL_7OSM_129

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGGCUAACCUUGAGUCCUUGUGGCUCUUGGCGAACCA

Length

37 nucleotides

Bulged bases

7OSM|1|18S|U|711, 7OSM|1|18S|C|716, 7OSM|1|18S|U|718, 7OSM|1|18S|U|719, 7OSM|1|18S|G|720, 7OSM|1|18S|U|721, 7OSM|1|18S|G|722, 7OSM|1|18S|G|729, 7OSM|1|18S|A|733

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OSM|1|18S|U|701
7OSM|1|18S|G|702
7OSM|1|18S|G|703
7OSM|1|18S|C|704
7OSM|1|18S|U|705
7OSM|1|18S|A|706
7OSM|1|18S|A|707
7OSM|1|18S|C|708
7OSM|1|18S|C|709
7OSM|1|18S|U|710
7OSM|1|18S|U|711
7OSM|1|18S|G|712
7OSM|1|18S|A|713
7OSM|1|18S|G|714
7OSM|1|18S|U|715
7OSM|1|18S|C|716
7OSM|1|18S|C|717
7OSM|1|18S|U|718
7OSM|1|18S|U|719
7OSM|1|18S|G|720
7OSM|1|18S|U|721
7OSM|1|18S|G|722
7OSM|1|18S|G|723
7OSM|1|18S|C|724
7OSM|1|18S|U|725
7OSM|1|18S|C|726
7OSM|1|18S|U|727
7OSM|1|18S|U|728
7OSM|1|18S|G|729
7OSM|1|18S|G|730
7OSM|1|18S|C|731
7OSM|1|18S|G|732
7OSM|1|18S|A|733
7OSM|1|18S|A|734
7OSM|1|18S|C|735
7OSM|1|18S|C|736
7OSM|1|18S|A|737

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS4

40S ribosomal protein S4