HL_7OT5_075

3D structure

PDB id

7OT5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

7OT5|1|2|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OT5_075 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1099

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7OT5|1|2|G|259
7OT5|1|2|G|260
7OT5|1|2|U|261
7OT5|1|2|A|262
7OT5|1|2|A|263
7OT5|1|2|C|264
7OT5|1|2|G|265
7OT5|1|2|G|266
7OT5|1|2|C|267

Current chains

Chain 2

16S rRNA

Nearby chains

Chain u

30S ribosomal protein S17

Chain x

30S ribosomal protein S20