HL_7OTC_028

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

7OTC|1|A|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OTC_028 not in the Motif Atlas

Geometric match to HL_1MMS_001

Geometric discrepancy: 0.1033

The information below is about HL_1MMS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7OTC|1|A|C|1064
7OTC|1|A|U|1065
7OTC|1|A|U|1066
7OTC|1|A|A|1067
7OTC|1|A|G|1068
7OTC|1|A|A|1069
7OTC|1|A|A|1070
7OTC|1|A|G|1071
7OTC|1|A|C|1072
7OTC|1|A|A|1073
7OTC|1|A|G|1074

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain w

Elongation factor G