HL_7OTC_087

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OTC_087 not in the Motif Atlas

Homologous match to HL_5J7L_016

Geometric discrepancy: 0.0769

The information below is about HL_5J7L_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7OTC|1|a|C|726
7OTC|1|a|G|727
7OTC|1|a|A|728
7OTC|1|a|A|729
7OTC|1|a|G|730
7OTC|1|a|G|731

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain o

30S ribosomal protein S15

Chain u

30S ribosomal protein S21