HL_7OTC_089

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

7OTC|1|a|C|841, 7OTC|1|a|A|845

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OTC_089 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3405

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7OTC|1|a|C|840
7OTC|1|a|C|841
7OTC|1|a|U|842
7OTC|1|a|U|843
7OTC|1|a|G|844
7OTC|1|a|A|845
7OTC|1|a|G|846

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S18