HL_7OW7_005

3D structure

PDB id

7OW7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EIF6-bound large subunit of the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

7OW7|1|A|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OW7_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.444

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7OW7|1|A|U|204
7OW7|1|A|C|205
7OW7|1|A|U|206
7OW7|1|A|G|207
7OW7|1|A|A|208
7OW7|1|A|U|209
7OW7|1|A|C|210
7OW7|1|A|G|211

Current chains

Chain A

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L4

Chain S

60S ribosomal protein L26

Chain Y

60S ribosomal protein L32