RNA 3D Hub //

7OW7 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7OW7_0011/A/37:44No text annotation
homologous
HL_8C3A_001
NA
HL_7OW7_0021/A/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_7OW7_0031/A/89:95No text annotation
homologous
HL_8C3A_003
NA
HL_7OW7_0051/A/204:211T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_7OW7_0061/A/222:226No text annotation
homologous
HL_8C3A_006
NA
HL_7OW7_0071/A/230:238T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_7OW7_0081/A/289:298No text annotation
homologous
HL_8C3A_008
NA
HL_7OW7_0091/A/314:323Pseudoknot geometry
geometric
HL_4QLM_002
HL_00911.2
HL_7OW7_0101/A/368:373GNRA
homologous
HL_8C3A_010
NA
HL_7OW7_0721/A/393:398GNRA
homologous
HL_8C3A_011
NA
HL_7OW7_0731/A/1317:1326T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_7OW7_0171/A/1364:1373No text annotation
HL_7OW7_0181/A/1389:1394GNRA
homologous
HL_8C3A_016
NA
HL_7OW7_0211/A/1561:1566GNRA
homologous
HL_8C3A_019
NA
HL_7OW7_0221/A/1593:1602No text annotation
homologous
HL_8C3A_020
NA
HL_7OW7_0231/A/1627:1635No text annotation
homologous
HL_8C3A_021
NA
HL_7OW7_0241/A/1675:1680Externally structured
homologous
HL_8C3A_022
NA
HL_7OW7_0261/A/1816:1823No text annotation
geometric
HL_5TBW_024
NA
HL_7OW7_0271/A/1864:1870GNRA
homologous
HL_8C3A_025
NA
HL_7OW7_0281/A/1886:1893No text annotation
homologous
HL_8C3A_026
NA
HL_7OW7_0311/A/2317:2322GNRA
homologous
HL_8C3A_030
NA
HL_7OW7_0321/A/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_7OW7_0331/A/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_8C3A_032
NA
HL_7OW7_0341/A/2458:2463GNRA variation
homologous
HL_8C3A_033
NA
HL_7OW7_0351/A/2523:2532No text annotation
homologous
HL_8C3A_035
NA
HL_7OW7_0371/A/2578:2583GNRA
homologous
HL_8C3A_036
NA
HL_7OW7_0741/A/2624:2632No text annotation
homologous
HL_8C3A_037
NA
HL_7OW7_0391/A/2664:2670Other HL
geometric
HL_4V9F_039
HL_67772.1
HL_7OW7_0411/A/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_7OW7_0421/A/2792:2799No text annotation
homologous
HL_8C3A_041
NA
HL_7OW7_0431/A/2810:2816GNRA
homologous
HL_8C3A_042
NA
HL_7OW7_0441/A/2872:2877UNCG
homologous
HL_8C3A_043
NA
HL_7OW7_0451/A/3614:3618No text annotation
homologous
HL_8C3A_045
NA
HL_7OW7_0751/A/3639:3649No text annotation
homologous
HL_8P9A_157
HL_87681.1
HL_7OW7_0471/A/3668:3674GNRA
homologous
HL_8C3A_047
NA
HL_7OW7_0761/A/3724:3729GNRA
homologous
HL_8P9A_159
HL_34789.2
HL_7OW7_0491/A/3796:3804No text annotation
homologous
HL_8C3A_050
NA
HL_7OW7_0501/A/3873:3882No text annotation
homologous
HL_8C3A_051
NA
HL_7OW7_0511/A/4193:4201No text annotation
homologous
HL_8C3A_055
NA
HL_7OW7_0521/A/4210:4222No text annotation
homologous
HL_8C3A_056
NA
HL_7OW7_0531/A/4250:4258No text annotation
homologous
HL_8C3A_057
NA
HL_7OW7_0541/A/4270:4277Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_7OW7_0551/A/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_7OW7_0561/A/4321:4326GNRA
homologous
HL_8C3A_060
NA
HL_7OW7_0571/A/4352:4362Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_7OW7_0591/A/4472:4483No text annotation
HL_7OW7_0601/A/4497:4503No text annotation
geometric
HL_5TBW_063
NA
HL_7OW7_0611/A/4540:4545GNRA
homologous
HL_8C3A_065
NA
HL_7OW7_0621/A/4603:4608GNRA
geometric
HL_5VW1_001
HL_34789.2
HL_7OW7_0631/A/4646:4651Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_7OW7_0641/A/4688:4702No text annotation
homologous
HL_8C3A_068
NA
HL_7OW7_0651/A/4907:4914No text annotation
geometric
HL_2Y9H_003
HL_75660.7
HL_7OW7_0661/A/4975:4983No text annotation
geometric
HL_5J7L_201
NA
HL_7OW7_0771/B/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_7OW7_0671/B/36:41No text annotation
homologous
HL_5TBW_185
NA
HL_7OW7_0681/B/86:91GNRA
homologous
HL_5TBW_186
NA
HL_7OW7_0691/C/47:56Pseudoknot with intercalation
geometric
HL_4V9F_001
HL_17803.1
HL_7OW7_0711/C/107:112No text annotation
geometric
HL_4LFB_004
HL_89167.2

Problematic loops

#loop idProblemSequence
HL_7OW7_004No text annotation
HL_7OW7_011No text annotation
HL_7OW7_012No text annotation
HL_7OW7_013No text annotation
HL_7OW7_014Mini UNCG
HL_7OW7_015No text annotation
HL_7OW7_016No text annotation
HL_7OW7_019No text annotation
HL_7OW7_020Mini UNCG
HL_7OW7_025No text annotation
HL_7OW7_029No text annotation
HL_7OW7_030Mini UNCG
HL_7OW7_036GNRA with extra cWW
HL_7OW7_038No text annotation
HL_7OW7_040No text annotation
HL_7OW7_046No text annotation
HL_7OW7_048tRNA anticodon loop
HL_7OW7_058No text annotation
HL_7OW7_070No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7OW7_0011/A/6:7,
1/C/149:151		Single bulged C
homologous
IL_8C3A_002
NA
IL_7OW7_0021/A/12:14,
1/C/143:144		Single bulged U
homologous
IL_8C3A_003
NA
IL_7OW7_0031/A/16:18,
1/C/139:141		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_01003.2
IL_7OW7_0041/A/26:27,
1/A/55:57		No text annotation
homologous
IL_8C3A_004
NA
IL_7OW7_0051/A/30:37,
1/A/44:52		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_93502.1
IL_7OW7_0061/A/81:88,
1/A/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_7OW7_0071/A/118:121,
1/A/152:153		Major groove intercalation
geometric
IL_1NBS_009
IL_71421.2
IL_7OW7_1681/A/118:122,
1/A/147:153		No text annotation
IL_7OW7_0081/A/121:122,
1/A/147:152		No text annotation
homologous
IL_8C3A_007
NA
IL_7OW7_0091/A/125:126,
1/A/142:144		Single bulged C
geometric
IL_1DQF_001
NA
IL_7OW7_0101/A/195:196,
1/A/244:246		Single bulged C
geometric
IL_1DQF_001
NA
IL_7OW7_0111/A/199:201,
1/A/214:215		Single bulged U
homologous
IL_8C3A_013
NA
IL_7OW7_0121/A/339:342,
1/C/32:33		Minor groove platform
geometric
IL_7RQB_073
NA
IL_7OW7_0131/A/348:350,
1/C/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_7OW7_0141/A/387:390,
1/A/401:414		No text annotation
geometric
IL_5TBW_014
NA
IL_7OW7_0161/A/415:421,
1/C/13:19		Triple sheared with non-canonical cWW
geometric
IL_5TBW_015
NA
IL_7OW7_0171/A/443:446,
1/A/1300:1304		No text annotation
geometric
IL_4PHY_003
IL_49140.1
IL_7OW7_0181/A/448:450,
1/A/1297:1298		Single bulged C
geometric
IL_4C7O_003
IL_05642.2
IL_7OW7_0201/A/462:464,
1/A/691:693		Isolated non-canonical cWW pair
geometric
IL_4LFB_059
IL_01003.2
IL_7OW7_0211/A/466:472,
1/A/682:689		No text annotation
IL_7OW7_0221/A/482:485,
1/A/671:672		Multiple bulged bases
geometric
IL_5WTK_001
IL_71421.2
IL_7OW7_0231/A/487:488,
1/A/665:669		Minor groove platform
geometric
IL_5J7L_247
NA
IL_7OW7_0261/A/709:710,
1/A/1286:1288		Single bulged G
geometric
IL_4LFB_036
IL_28408.2
IL_7OW7_0271/A/723:724,
1/A/942:945		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_7OW7_0281/A/727:731,
1/A/938:939		No text annotation
IL_7OW7_0291/A/732:735,
1/A/928:937		No text annotation
IL_7OW7_0321/A/745:752,
1/A/911:919		No text annotation
geometric
IL_5TBW_020
NA
IL_7OW7_0331/A/1073:1074,
1/A/1237:1239		Single bulged A
geometric
IL_4R4V_003
IL_14190.2
IL_7OW7_0391/A/1244:1245,
1/A/1265:1267		Single bulged G
geometric
IL_4V88_442
NA
IL_7OW7_0401/A/1357:1360,
1/A/1379:1382		No text annotation
IL_7OW7_1711/A/1357:1361,
1/A/1376:1382		No text annotation
IL_7OW7_0411/A/1360:1361,
1/A/1376:1379		Major groove intercalation
geometric
IL_1NBS_009
IL_71421.2
IL_7OW7_0421/A/1425:1429,
1/A/1455:1460		Triple sheared related
geometric
IL_4V9F_018
IL_67427.1
IL_7OW7_0431/A/1431:1434,
1/A/1450:1453		Double sheared
geometric
IL_4KZD_002
IL_58355.2
IL_7OW7_0441/A/1467:1468,
1/A/1496:1498		Single bulged A
homologous
IL_8C3A_026
NA
IL_7OW7_0451/A/1474:1476,
1/A/1489:1490		No text annotation
IL_7OW7_1721/A/1520:1522,
1/A/1655:1657		Isolated non-canonical cWW pair
homologous
IL_8P9A_255
IL_01003.2
IL_7OW7_1731/A/1522:1526,
1/A/1648:1655		No text annotation
homologous
IL_8P9A_256
IL_73855.1
IL_7OW7_0481/A/1545:1546,
1/A/1612:1614		Single bulged A
homologous
IL_8C3A_031
NA
IL_7OW7_0491/A/1550:1551,
1/A/1576:1578		Single bulged G
homologous
IL_8C3A_032
NA
IL_7OW7_0501/A/1551:1555,
1/A/1572:1576		Triple sheared
geometric
IL_4V9F_027
IL_15190.2
IL_7OW7_0511/A/1586:1589,
1/A/1605:1607		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_7OW7_0521/A/1590:1592,
1/A/1603:1604		Single bulged U
homologous
IL_8C3A_035
NA
IL_7OW7_0531/A/1624:1626,
1/A/1636:1640		No text annotation
homologous
IL_8C3A_036
NA
IL_7OW7_0541/A/1671:1673,
1/A/1682:1684		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_7OW7_0551/A/1686:1688,
1/A/1848:1851		No text annotation
IL_7OW7_0571/A/1723:1725,
1/A/1838:1839		Single bulged G
homologous
IL_8C3A_040
NA
IL_7OW7_1741/A/1732:1737,
1/A/1792:1797		No text annotation
IL_7OW7_1751/A/1737:1738,
1/A/1790:1792		Minor groove platform
homologous
IL_8C3A_042
NA
IL_7OW7_1761/A/1739:1744,
1/A/1786:1789		C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_7OW7_1771/A/1746:1749,
1/A/1781:1784		Tandem non-canonical cWW pairs
homologous
IL_8P9A_269
IL_71194.2
IL_7OW7_1781/A/1749:1751,
1/A/1779:1781		Isolated non-canonical cWW pair
homologous
IL_8C3A_045
NA
IL_7OW7_0611/A/1814:1816,
1/A/1823:1824		Single bulged G
homologous
IL_8C3A_048
NA
IL_7OW7_1791/A/1858:1860,
1/A/1874:1876		Isolated non-canonical cWW pair
homologous
IL_8P9A_274
IL_01003.2
IL_7OW7_0631/A/1905:1909,
1/A/2067:2071		UAA/GAN
homologous
IL_8C3A_051
NA
IL_7OW7_0641/A/1911:1918,
1/A/2064:2065		SSU/LSU pseudoknot
geometric
IL_7RQB_037
NA
IL_7OW7_0651/A/1918:1920,
1/A/2063:2064		No text annotation
IL_7OW7_0661/A/1920:1922,
1/A/2062:2063		No text annotation
IL_7OW7_0671/A/1926:1933,
1/A/2053:2058		No text annotation
geometric
IL_5TBW_051
NA
IL_7OW7_0681/A/1933:1944,
1/A/2038:2053		No text annotation
geometric
IL_5TBW_052
NA
IL_7OW7_0691/A/1946:1948,
1/A/2035:2036		Single bulged U
homologous
IL_8C3A_056
NA
IL_7OW7_0701/A/2083:2085,
1/A/2272:2273		No text annotation
IL_7OW7_0711/A/2290:2292,
1/A/2342:2345		No text annotation
homologous
IL_8C3A_061
NA
IL_7OW7_0721/A/2299:2301,
1/A/2334:2335		Single bulged A
homologous
IL_8C3A_062
NA
IL_7OW7_0731/A/2302:2309,
1/A/2329:2333		Kink-turn
homologous
IL_8C3A_063
NA
IL_7OW7_0741/A/2312:2314,
1/A/2325:2326		Single bulged A
geometric
IL_5WWT_001
IL_14190.2
IL_7OW7_1811/A/2358:2364,
1/A/3858:3863		7x6 Sarcin-Ricin; G-bulge
homologous
IL_8P9A_289
IL_02666.1
IL_7OW7_0751/A/2406:2409,
1/A/2783:2784		Major groove platform; stack outside cWW
geometric
IL_4V9F_050
IL_74641.2
IL_7OW7_1821/A/2415:2419,
1/A/2427:2429		C-loop
homologous
IL_8C3A_482
NA
IL_7OW7_0771/A/2446:2450,
1/A/2509:2514		UAA/GAN
homologous
IL_8C3A_067
NA
IL_7OW7_0801/A/2549:2550,
1/A/2768:2770		Single bulged U
geometric
IL_7KVT_002
IL_97561.2
IL_7OW7_0811/A/2589:2593,
1/A/2752:2756		Triple sheared
geometric
IL_7RQB_075
NA
IL_7OW7_0821/A/2613:2614,
1/A/2724:2726		Single bulged A
geometric
IL_3MJA_001
NA
IL_7OW7_0831/A/2614:2615,
1/A/2722:2724		Single stack bend
homologous
IL_8C3A_076
NA
IL_7OW7_0841/A/2646:2648,
1/A/2685:2688		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_87316.1
IL_7OW7_0851/A/2651:2653,
1/A/2681:2682		Single bulged G
geometric
IL_4WF9_023
IL_28408.2
IL_7OW7_0861/A/2656:2662,
1/A/2672:2678		No text annotation
homologous
IL_8C3A_079
NA
IL_7OW7_1831/A/2832:2838,
1/A/3850:3853		No text annotation
homologous
IL_8C3A_080
NA
IL_7OW7_1841/A/2844:2846,
1/A/3842:3844		No text annotation
homologous
IL_8C3A_081
NA
IL_7OW7_1851/A/2847:2850,
1/A/3840:3841		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_7OW7_1861/A/2847:2855,
1/A/3837:3841		No text annotation
homologous
IL_8P9A_305
IL_80252.1
IL_7OW7_0921/A/2850:2855,
1/A/3837:3840		Intercalated tWH
geometric
IL_4V9F_062
IL_28217.1
IL_7OW7_0931/A/2867:2872,
1/A/2877:2883		tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
IL_20700.1
IL_7OW7_0941/A/2889:2891,
1/A/3610:3612		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_7OW7_0951/A/2896:2897,
1/A/3602:3605		No text annotation
homologous
IL_8C3A_086
NA
IL_7OW7_0981/A/3632:3633,
1/A/3827:3829		Single bulged A
geometric
IL_7RQB_069
NA
IL_7OW7_0991/A/3660:3665,
1/A/3677:3684		No text annotation
homologous
IL_8C3A_088
NA
IL_7OW7_1011/A/3700:3703,
1/A/3749:3750		No text annotation
homologous
IL_8C3A_089
NA
IL_7OW7_1021/A/3704:3705,
1/A/3745:3748		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_7OW7_1041/A/3708:3714,
1/A/3739:3742		No text annotation
IL_7OW7_1871/A/3715:3721,
1/A/3732:3738		No text annotation
homologous
IL_8C3A_093
NA
IL_7OW7_1061/A/3780:3781,
1/A/3811:3814		No text annotation
homologous
IL_8C3A_094
NA
IL_7OW7_1881/A/3781:3792,
1/A/3808:3811		No text annotation
homologous
IL_8C3A_095
NA
IL_7OW7_1091/A/3895:3898,
1/A/4563:4565		No text annotation
homologous
IL_8C3A_096
NA
IL_7OW7_1111/A/3900:3902,
1/A/4558:4561		No text annotation
homologous
IL_8C3A_097
NA
IL_7OW7_1121/A/3913:3915,
1/A/4388:4389		Single bulged U
homologous
IL_8C3A_098
NA
IL_7OW7_1131/A/3916:3917,
1/A/4384:4387		Minor groove platform
homologous
IL_8C3A_099
NA
IL_7OW7_1151/A/3927:3929,
1/A/4181:4184		No text annotation
homologous
IL_8C3A_100
NA
IL_7OW7_1161/A/4082:4088,
1/A/4161:4164		No text annotation
homologous
IL_8C3A_106
NA
IL_7OW7_1171/A/4191:4192,
1/A/4202:4204		Single bulged A
homologous
IL_8C3A_107
NA
IL_7OW7_1181/A/4243:4245,
1/A/4263:4267		No text annotation
homologous
IL_8C3A_108
NA
IL_7OW7_1891/A/4291:4293,
1/A/4317:4318		Single bulged A
geometric
IL_7A0S_064
IL_14190.2
IL_7OW7_1901/A/4295:4298,
1/A/4312:4315		Tandem non-canonical cWW pairs
homologous
IL_8C3A_109
NA
IL_7OW7_1211/A/4347:4350,
1/A/4364:4365		Single stack bend
geometric
IL_5J7L_269
NA
IL_7OW7_1911/A/4400:4401,
1/A/4442:4444		Major groove platform
homologous
IL_8P9A_329
IL_48076.8
IL_7OW7_1921/A/4401:4403,
1/A/4440:4442		Isolated non-canonical cWW pair
homologous
IL_8P9A_330
IL_01003.2
IL_7OW7_1931/A/4403:4405,
1/A/4439:4440		No text annotation
homologous
IL_8P9A_331
IL_46637.2
IL_7OW7_1231/A/4405:4407,
1/A/4435:4439		Major groove minor groove platform with extra cWW
geometric
IL_5TBW_105
NA
IL_7OW7_1251/A/4412:4416,
1/A/4426:4430		Triple sheared
geometric
IL_5TBW_106
NA
IL_7OW7_1261/A/4453:4454,
1/A/4526:4528		Major groove platform
homologous
IL_8C3A_115
NA
IL_7OW7_1941/A/4456:4458,
1/A/4520:4524		No text annotation
homologous
IL_8C3A_116
NA
IL_7OW7_1281/A/4458:4459,
1/A/4517:4520		Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_7OW7_1291/A/4466:4468,
1/A/4489:4491		Isolated non-canonical cWW pair
homologous
IL_8C3A_118
NA
IL_7OW7_1951/A/4466:4470,
1/A/4485:4491		No text annotation
IL_7OW7_1301/A/4468:4470,
1/A/4485:4489		No text annotation
IL_7OW7_1321/A/4495:4497,
1/A/4503:4505		Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_7OW7_1341/A/4537:4538,
1/A/4547:4549		Single bulged A
homologous
IL_8C3A_122
NA
IL_7OW7_1371/A/4580:4582,
1/A/4721:4723		No text annotation
geometric
IL_3ICQ_003
NA
IL_7OW7_1381/A/4582:4585,
1/A/4717:4721		Double sheared
geometric
IL_6E7L_002
IL_69065.1
IL_7OW7_1961/A/4590:4592,
1/A/4618:4620		Isolated non-canonical cWW pair
homologous
IL_8P9A_343
IL_71625.2
IL_7OW7_1391/A/4596:4603,
1/A/4608:4614		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_7OW7_1971/A/4624:4629,
1/A/4669:4673		No text annotation
IL_7OW7_1981/A/4632:4637,
1/A/4662:4666		UAA/GAN related
homologous
IL_8C3A_127
NA
IL_7OW7_1421/A/4638:4640,
1/A/4659:4661		Isolated cWH basepair
geometric
IL_3R1C_012
IL_10892.2
IL_7OW7_1431/A/4641:4642,
1/A/4655:4658		No text annotation
homologous
IL_8C3A_128
NA
IL_7OW7_1441/A/4680:4685,
1/A/4705:4710		UAA/GAN with extra cWW
geometric
IL_5J7L_350
NA
IL_7OW7_1471/A/4749:4751,
1/A/4948:4951		No text annotation
IL_7OW7_1481/A/4756:4765,
1/A/4869:4877		No text annotation
IL_7OW7_2001/A/4972:4975,
1/A/4983:4986		Tandem non-canonical cWW pairs
geometric
IL_3TZR_003
IL_71194.2
IL_7OW7_1531/A/4992:4994,
1/A/5057:5059		Isolated non-canonical cWW pair
geometric
IL_3IVK_002
IL_01003.2
IL_7OW7_1541/A/4996:4997,
1/A/5053:5055		Single bulged C
geometric
IL_1KUQ_002
IL_05642.2
IL_7OW7_1551/A/5000:5002,
1/A/5045:5050		No text annotation
homologous
IL_8C3A_138
NA
IL_7OW7_1561/A/5003:5009,
1/A/5039:5044		No text annotation
IL_7OW7_1581/A/5012:5014,
1/A/5035:5036		Single bulged C
geometric
IL_4WF9_035
IL_05642.2
IL_7OW7_1591/A/5014:5017,
1/A/5032:5035		Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_7OW7_1601/B/15:16,
1/B/62:64		Single bulged A
homologous
IL_5TBW_372
NA
IL_7OW7_1611/B/21:27,
1/B/52:57		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_7OW7_1621/B/28:29,
1/B/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_357
NA
IL_7OW7_1631/B/32:36,
1/B/41:45		Symmetric double minor groove platform
geometric
IL_7RQB_114
NA
IL_7OW7_1641/B/71:78,
1/B/98:104		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_7OW7_1651/B/79:81,
1/B/95:97		No text annotation
geometric
IL_7RQB_015
NA
IL_7OW7_1661/B/82:85,
1/B/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_7OW7_1671/C/64:66,
1/C/92:95		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA

Problematic loops

#loop idProblemSequence
IL_7OW7_015Isolated non-canonical cWW pair
IL_7OW7_019Single bulged C
IL_7OW7_169Tandem non-canonical cWW pairs
IL_7OW7_170Isolated cWH basepair
IL_7OW7_024No text annotation
IL_7OW7_025Single bulged A
IL_7OW7_030Single stack bend
IL_7OW7_031Isolated cWS basepair
IL_7OW7_034No text annotation
IL_7OW7_035Tandem non-canonical cWW pairs
IL_7OW7_201Isolated cWH basepair
IL_7OW7_036Single bulged C
IL_7OW7_037Tandem non-canonical cWW pairs
IL_7OW7_038Isolated cWH basepair
IL_7OW7_046No text annotation
IL_7OW7_047No text annotation
IL_7OW7_056No text annotation
IL_7OW7_058No text annotation
IL_7OW7_059No text annotation
IL_7OW7_060No text annotation
IL_7OW7_062Tandem non-canonical cWW pairs
IL_7OW7_180No text annotation
IL_7OW7_076No text annotation
IL_7OW7_078No text annotation
IL_7OW7_079Self complementary
IL_7OW7_087No text annotation
IL_7OW7_088No text annotation
IL_7OW7_089Stack and bulge
IL_7OW7_090No text annotation
IL_7OW7_091Major groove platform with extra pair
IL_7OW7_096Isolated non-canonical cWW pair
IL_7OW7_097Isolated non-canonical cWW pair
IL_7OW7_100Stack and bulge
IL_7OW7_103No text annotation
IL_7OW7_105No text annotation
IL_7OW7_107No text annotation
IL_7OW7_108Stack and bulge
IL_7OW7_110Isolated non-canonical cWW pair
IL_7OW7_114No text annotation
IL_7OW7_119Decoding loop related
IL_7OW7_120No text annotation
IL_7OW7_122No text annotation
IL_7OW7_124Stack and bulge
IL_7OW7_127No text annotation
IL_7OW7_131Not an internal loop
IL_7OW7_133No text annotation
IL_7OW7_135Isolated non-canonical cWW pair
IL_7OW7_136Stack and bulge
IL_7OW7_140No text annotation
IL_7OW7_141No text annotation
IL_7OW7_199No text annotation
IL_7OW7_145Isolated non-canonical cWW pair
IL_7OW7_146Tandem non-canonical cWW pairs
IL_7OW7_149Isolated non-canonical cWW pair
IL_7OW7_150Triple non-canonical cWW pairs
IL_7OW7_151No text annotation
IL_7OW7_152Single bulged C
IL_7OW7_157Stack and bulge

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7OW7_0011/A/112:116,
1/A/155:160,
1/A/275:278		No text annotation
J3_7OW7_0191/A/196:199,
1/A/215:228,
1/A/240:244		No text annotation
J3_7OW7_0201/A/351:367,
1/A/374:379,
1/C/21:24		No text annotation
homologous
J3_8P9A_045
J3_07616.1
J3_7OW7_0021/A/380:387,
1/A/414:415,
1/C/19:20		No text annotation
geometric
J3_4WF9_010
J3_68715.1
J3_7OW7_0211/A/380:390,
1/A/401:415,
1/C/19:20		No text annotation
homologous
J3_8P9A_047
J3_17917.1
J3_7OW7_0221/A/451:455,
1/A/701:705,
1/A/1292:1296		No text annotation
J3_7OW7_0041/A/1531:1537,
1/A/1622:1624,
1/A/1640:1643		No text annotation
homologous
J3_8C3A_003
NA
J3_7OW7_0051/A/1546:1548,
1/A/1580:1584,
1/A/1609:1612		No text annotation
homologous
J3_8C3A_004
NA
J3_7OW7_0061/A/1726:1727,
1/A/1802:1806,
1/A/1832:1837		No text annotation
homologous
J3_8P9A_051
J3_84137.1
J3_7OW7_0071/A/2393:2399,
1/A/2805:2807,
1/A/2819:2822		No text annotation
homologous
J3_8C3A_006
NA
J3_7OW7_0081/A/2402:2405,
1/A/2785:2791,
1/A/2800:2802		No text annotation
homologous
J3_8C3A_007
NA
J3_7OW7_0091/A/2440:2445,
1/A/2515:2519,
1/A/2536:2537		No text annotation
homologous
J3_8P9A_055
J3_94309.1
J3_7OW7_0101/A/2551:2555,
1/A/2572:2575,
1/A/2757:2767		No text annotation
J3_7OW7_0111/A/2575:2576,
1/A/2585:2589,
1/A/2756:2757		No text annotation
homologous
J3_8C3A_054
NA
J3_7OW7_0231/A/2598:2602,
1/A/2737:2738,
1/A/2742:2747		No text annotation
homologous
J3_8C3A_055
NA
J3_7OW7_0121/A/3937:3939,
1/A/4074:4078,
1/A/4168:4173		No text annotation
geometric
J3_8VTW_006
NA
J3_7OW7_0131/A/4091:4094,
1/A/4114:4129,
1/A/4155:4158		No text annotation
homologous
J3_8C3A_009
NA
J3_7OW7_0241/A/4228:4230,
1/A/4331:4342,
1/A/4370:4375		No text annotation
homologous
J3_8C3A_056
NA
J3_7OW7_0141/A/4241:4243,
1/A/4267:4269,
1/A/4278:4283		No text annotation
homologous
J3_8C3A_010
NA
J3_7OW7_0251/A/4463:4466,
1/A/4491:4493,
1/A/4507:4513		No text annotation
homologous
J3_8C3A_011
NA
J3_7OW7_0261/A/4751:4754,
1/A/4879:4883,
1/A/4936:4948		No text annotation
J3_7OW7_0171/B/9:14,
1/B/65:66,
1/B/109:110		No text annotation
homologous
J3_5TBW_045
NA
J3_7OW7_0181/C/44:45,
1/C/58:64,
1/C/95:99		No text annotation
homologous
J3_8C3A_060
NA
J4_7OW7_0011/A/111:112,
1/A/278:283,
1/A/304:310,
1/A/327:330		No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_7OW7_0021/A/196:199,
1/A/215:222,
1/A/226:228,
1/A/240:244		No text annotation
J4_7OW7_0031/A/981:983,
1/A/1070:1072,
1/A/1240:1243,
1/A/1268:1273		No text annotation
J4_7OW7_0041/A/2365:2371,
1/A/2389:2391,
1/A/2824:2829,
1/A/3856:3857		No text annotation
J4_7OW7_0051/A/2406:2410,
1/A/2434:2439,
1/A/2538:2539,
1/A/2777:2784		No text annotation
J4_7OW7_0061/A/2409:2410,
1/A/2434:2439,
1/A/2538:2539,
1/A/2777:2783		No text annotation
J4_7OW7_0071/A/2618:2619,
1/A/2637:2642,
1/A/2692:2698,
1/A/2718:2719		No text annotation
J4_7OW7_0081/A/3634:3638,
1/A/3650:3654,
1/A/3690:3694,
1/A/3821:3826		No text annotation
homologous
J4_8P9A_017
J4_78485.1
J4_7OW7_0091/A/3696:3698,
1/A/3752:3753,
1/A/3771:3780,
1/A/3814:3819		No text annotation
homologous
J4_8P9A_018
J4_42306.1
J4_7OW7_0101/A/4231:4235,
1/A/4289:4291,
1/A/4318:4319,
1/A/4328:4330		No text annotation
J4_7OW7_0111/A/4231:4235,
1/A/4289:4293,
1/A/4317:4319,
1/A/4328:4330		No text annotation
homologous
J4_8P9A_019
J4_59590.1
J4_7OW7_0121/A/4587:4590,
1/A/4620:4621,
1/A/4676:4678,
1/A/4712:4715		No text annotation
J5_7OW7_0061/A/20:21,
1/C/35:42,
1/C/101:106,
1/C/113:114,
1/C/136:137		No text annotation
J5_7OW7_0021/A/1335:1340,
1/A/1516:1519,
1/A/1658:1661,
1/A/2288:2290,
1/A/2345:2351		No text annotation
homologous
J5_8P9A_011
J5_08384.1
J5_7OW7_0031/A/2855:2863,
1/A/2887:2888,
1/A/3613:3614,
1/A/3618:3626,
1/A/3835:3837		No text annotation
homologous
J5_8C3A_004
NA
J5_7OW7_0041/A/3903:3910,
1/A/4392:4400,
1/A/4444:4453,
1/A/4528:4534,
1/A/4552:4557		No text annotation
J5_7OW7_0051/A/3920:3923,
1/A/4188:4191,
1/A/4204:4205,
1/A/4227:4228,
1/A/4375:4381		No text annotation
homologous
J5_8P9A_015
J5_96125.1
J6_7OW7_0011/A/21:26,
1/A/57:67,
1/A/74:78,
1/A/105:109,
1/A/332:339,
1/C/33:35		No text annotation
J6_7OW7_0021/A/1352:1355,
1/A/1384:1388,
1/A/1395:1399,
1/A/1418:1421,
1/A/1464:1466,
1/A/1499:1504		No text annotation
J6_7OW7_0031/A/3920:3923,
1/A/4188:4191,
1/A/4204:4205,
1/A/4227:4230,
1/A/4331:4342,
1/A/4370:4381		No text annotation
J7_7OW7_0011/A/1666:1671,
1/A/1684:1685,
1/A/1852:1855,
1/A/1879:1884,
1/A/1895:1899,
1/A/2077:2078,
1/A/2278:2283		No text annotation

Problematic loops

#loop idProblemSequence
J3_7OW7_003No text annotation
J3_7OW7_015No text annotation
J3_7OW7_016No text annotation
J5_7OW7_001No text annotation

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