HL_7OW7_018

3D structure

PDB id

7OW7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EIF6-bound large subunit of the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OW7_018 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.0755

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OW7|1|A|U|1389
7OW7|1|A|G|1390
7OW7|1|A|A|1391
7OW7|1|A|A|1392
7OW7|1|A|G|1393
7OW7|1|A|G|1394

Current chains

Chain A

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L18

Chain U

60S ribosomal protein L27a

Chain c

60S ribosomal protein L36

Chain r

60S ribosomal protein L13