HL_7OW7_048

3D structure

PDB id

7OW7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EIF6-bound large subunit of the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

A(A2M)GAAA(PSU)U

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OW7_048 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3194

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7OW7|1|A|A|3723
7OW7|1|A|A2M|3724
7OW7|1|A|G|3725
7OW7|1|A|A|3726
7OW7|1|A|A|3727
7OW7|1|A|A|3728
7OW7|1|A|PSU|3729
7OW7|1|A|U|3730

Current chains

Chain A

28S rRNA

Nearby chains

Chain c

60S ribosomal protein L36

Chain i

60S ribosomal protein L36a