HL_7OYD_001
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 7OYD|1|5|A|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OYD_001 not in the Motif Atlas
- Geometric match to HL_4V9F_006
- Geometric discrepancy: 0.0858
- The information below is about HL_4V9F_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48677.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
7OYD|1|5|U|37
7OYD|1|5|A|38
7OYD|1|5|A|39
7OYD|1|5|G|40
7OYD|1|5|C|41
7OYD|1|5|A|42
7OYD|1|5|U|43
7OYD|1|5|A|44
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- L13
- Chain N
- Ribosomal protein L15
- Chain a
- uL15
- Chain o
- RPL36A
Coloring options: