7OYD Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7OYD_001 | 1/5/37:44 | No text annotation | geometric HL_4V9F_006 HL_30068.2 | |
| HL_7OYD_002 | 1/5/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7OYD_003 | 1/5/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_7OYD_004 | 1/5/131:137 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_7OYD_005 | 1/5/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7OYD_006 | 1/5/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_7OYD_007 | 1/5/230:238 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7OYD_008 | 1/5/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_7OYD_009 | 1/5/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_7OYD_109 | 1/5/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7OYD_110 | 1/5/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_7OYD_013 | 1/5/964:974 | No text annotation | geometric HL_2Y9H_005 HL_86870.2 | |
| HL_7OYD_014 | 1/5/1182:1187 | No text annotation | geometric HL_8P9A_134 HL_70782.2 | |
| HL_7OYD_111 | 1/5/1321:1330 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7OYD_112 | 1/5/1368:1377 | No text annotation | ||
| HL_7OYD_017 | 1/5/1393:1398 | GNRA | homologous HL_8C3A_016 NA | |
| HL_7OYD_019 | 1/5/1441:1452 | Pseudoknot geometry | geometric HL_1ZCI_002 HL_94376.1 | |
| HL_7OYD_020 | 1/5/1483:1490 | No text annotation | ||
| HL_7OYD_021 | 1/5/1565:1570 | GNRA | homologous HL_8C3A_019 NA | |
| HL_7OYD_022 | 1/5/1597:1606 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_7OYD_023 | 1/5/1631:1639 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_7OYD_024 | 1/5/1679:1684 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_7OYD_026 | 1/5/1820:1827 | No text annotation | ||
| HL_7OYD_027 | 1/5/1868:1874 | GNRA | geometric HL_5TBW_025 NA | |
| HL_7OYD_028 | 1/5/1890:1897 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_7OYD_113 | 1/5/1982:1992 | No text annotation | homologous HL_8C3A_027 NA | |
| HL_7OYD_030 | 1/5/2010:2017 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_7OYD_032 | 1/5/2321:2326 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7OYD_033 | 1/5/2380:2388 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_7OYD_034 | 1/5/2424:2430 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_7OYD_035 | 1/5/2462:2467 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_7OYD_036 | 1/5/2527:2536 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_7OYD_037 | 1/5/2582:2587 | GNRA | homologous HL_8C3A_036 NA | |
| HL_7OYD_038 | 1/5/2628:2636 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_7OYD_039 | 1/5/2668:2674 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_7OYD_041 | 1/5/2742:2746 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_7OYD_042 | 1/5/2796:2803 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_7OYD_043 | 1/5/2814:2820 | GNRA | homologous HL_8C3A_042 NA | |
| HL_7OYD_044 | 1/5/2876:2881 | UNCG | homologous HL_8C3A_043 NA | |
| HL_7OYD_046 | 1/5/3618:3622 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_7OYD_047 | 1/5/3643:3653 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_7OYD_048 | 1/5/3672:3678 | GNRA | homologous HL_8C3A_047 NA | |
| HL_7OYD_114 | 1/5/3728:3733 | GNRA | homologous HL_8P9A_159 HL_37824.8 | |
| HL_7OYD_051 | 1/5/3800:3808 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_7OYD_052 | 1/5/3877:3886 | No text annotation | homologous HL_8P9A_162 HL_61996.3 | |
| HL_7OYD_054 | 1/5/4197:4205 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_7OYD_055 | 1/5/4214:4226 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_7OYD_056 | 1/5/4254:4262 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_7OYD_057 | 1/5/4274:4281 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_7OYD_058 | 1/5/4305:4313 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_7OYD_059 | 1/5/4325:4330 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7OYD_060 | 1/5/4356:4366 | tRNA anticodon loop | geometric HL_8H1B_001 HL_10453.3 | |
| HL_7OYD_061 | 1/5/4421:4429 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_7OYD_062 | 1/5/4478:4485 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_7OYD_063 | 1/5/4501:4507 | No text annotation | homologous HL_8C3A_064 NA | |
| HL_7OYD_064 | 1/5/4544:4549 | GNRA | homologous HL_8C3A_065 NA | |
| HL_7OYD_065 | 1/5/4607:4612 | GNRA | homologous HL_8C3A_066 NA | |
| HL_7OYD_066 | 1/5/4650:4655 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7OYD_067 | 1/5/4692:4706 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7OYD_069 | 1/5/4979:4987 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_7OYD_070 | 1/8/47:56 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_7OYD_071 | 1/8/68:90 | No text annotation | ||
| HL_7OYD_073 | 1/9/7:17 | No text annotation | geometric HL_4V88_186 NA | |
| HL_7OYD_074 | 1/9/69:80 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_7OYD_075 | 1/9/156:162 | GNRA related | geometric HL_4V88_188 NA | |
| HL_7OYD_076 | 1/9/197:202 | GNRA | geometric HL_5J7L_010 HL_37824.8 | |
| HL_7OYD_077 | 1/9/288:295 | T-loop with 1 bulged base | geometric HL_4V88_191 NA | |
| HL_7OYD_078 | 1/9/322:329 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7OYD_079 | 1/9/377:387 | No text annotation | ||
| HL_7OYD_080 | 1/9/416:421 | No text annotation | geometric HL_4V88_194 NA | |
| HL_7OYD_081 | 1/9/441:452 | No text annotation | geometric HL_4V88_195 NA | |
| HL_7OYD_082 | 1/9/462:467 | UNCG | geometric HL_4LFB_009 HL_34617.5 | |
| HL_7OYD_083 | 1/9/498:504 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_7OYD_084 | 1/9/539:544 | GNRA | geometric HL_4Y1M_003 HL_37824.8 | |
| HL_7OYD_085 | 1/9/569:581 | No text annotation | geometric HL_4V88_199 NA | |
| HL_7OYD_086 | 1/9/618:623 | GNRA variation | geometric HL_4V88_200 NA | |
| HL_7OYD_087 | 1/9/820:828 | No text annotation | homologous HL_8C3A_208 NA | |
| HL_7OYD_088 | 1/9/833:841 | No text annotation | geometric HL_8H9D_001 NA | |
| HL_7OYD_089 | 1/9/885:901 | No text annotation | homologous HL_8C3A_210 NA | |
| HL_7OYD_090 | 1/9/957:966 | No text annotation | geometric HL_4V88_206 NA | |
| HL_7OYD_091 | 1/9/994:999 | GNRA | geometric HL_1G1X_005 HL_37824.8 | |
| HL_7OYD_092 | 1/9/1054:1064 | No text annotation | geometric HL_5J7L_017 HL_75293.5 | |
| HL_7OYD_093 | 1/9/1114:1119 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7OYD_094 | 1/9/1141:1146 | GNRA | geometric HL_4V88_210 NA | |
| HL_7OYD_095 | 1/9/1178:1183 | GNRA | geometric HL_4V9F_023 HL_37824.8 | |
| HL_7OYD_096 | 1/9/1245:1254 | No text annotation | homologous HL_8C3A_217 NA | |
| HL_7OYD_097 | 1/9/1295:1304 | Anticodon loop related | geometric HL_4V88_213 NA | |
| HL_7OYD_098 | 1/9/1353:1358 | GNRA | geometric HL_5J7L_027 HL_37824.8 | |
| HL_7OYD_099 | 1/9/1366:1373 | T-loop related | geometric HL_4LFB_025 HL_77436.5 | |
| HL_7OYD_100 | 1/9/1416:1424 | No text annotation | geometric HL_8H9D_001 NA | |
| HL_7OYD_101 | 1/9/1460:1466 | GNRA | geometric HL_5J7L_004 HL_37824.8 | |
| HL_7OYD_102 | 1/9/1565:1570 | GNRA | geometric HL_7A0S_062 HL_37824.8 | |
| HL_7OYD_103 | 1/9/1614:1625 | No text annotation | geometric HL_4V88_219 NA | |
| HL_7OYD_104 | 1/9/1658:1666 | No text annotation | geometric HL_4V88_220 NA | |
| HL_7OYD_105 | 1/9/1760:1772 | No text annotation | ||
| HL_7OYD_106 | 1/9/1847:1852 | GNRA variation | geometric HL_4V88_222 NA | |
| HL_7OYD_116 | 1/K/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_7OYD_107 | 1/K/36:41 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_7OYD_108 | 1/K/86:91 | GNRA | homologous HL_4V9F_072 HL_37824.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7OYD_010 | GNRA with extra cWW | ||
| HL_7OYD_011 | No text annotation | ||
| HL_7OYD_012 | No text annotation | ||
| HL_7OYD_015 | No text annotation | ||
| HL_7OYD_016 | No text annotation | ||
| HL_7OYD_018 | No text annotation | ||
| HL_7OYD_025 | No text annotation | ||
| HL_7OYD_029 | tRNA D-loop | ||
| HL_7OYD_031 | No text annotation | ||
| HL_7OYD_040 | No text annotation | ||
| HL_7OYD_045 | No text annotation | ||
| HL_7OYD_049 | No text annotation | ||
| HL_7OYD_050 | No text annotation | ||
| HL_7OYD_053 | No text annotation | ||
| HL_7OYD_068 | No text annotation | ||
| HL_7OYD_072 | No text annotation | ||
| HL_7OYD_115 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7OYD_001 | 1/5/6:7, 1/8/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_7OYD_002 | 1/5/12:14, 1/8/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_7OYD_003 | 1/5/16:18, 1/8/139:141 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_7OYD_004 | 1/5/26:27, 1/5/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7OYD_005 | 1/5/30:37, 1/5/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_84694.2 | |
| IL_7OYD_006 | 1/5/81:88, 1/5/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_7OYD_007 | 1/5/118:121, 1/5/152:153 | Stack outside cWW | geometric IL_5J7L_268 IL_56987.1 | |
| IL_7OYD_256 | 1/5/118:122, 1/5/147:153 | No text annotation | ||
| IL_7OYD_008 | 1/5/121:122, 1/5/147:152 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_7OYD_009 | 1/5/125:126, 1/5/142:144 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_7OYD_011 | 1/5/178:189, 1/5/252:258 | No text annotation | ||
| IL_7OYD_012 | 1/5/195:196, 1/5/244:246 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_7OYD_013 | 1/5/199:201, 1/5/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7OYD_014 | 1/5/339:342, 1/8/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_7OYD_015 | 1/5/348:350, 1/8/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_7OYD_016 | 1/5/387:390, 1/5/401:414 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_7OYD_017 | 1/5/415:421, 1/8/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_7OYD_018 | 1/5/443:446, 1/5/1304:1308 | No text annotation | geometric IL_7MLW_007 IL_99358.1 | |
| IL_7OYD_019 | 1/5/448:450, 1/5/1301:1302 | Single bulged C | geometric IL_4C7O_003 IL_61258.15 | |
| IL_7OYD_020 | 1/5/462:464, 1/5/691:693 | Isolated non-canonical cWW pair | geometric IL_4LFB_006 IL_87907.2 | |
| IL_7OYD_022 | 1/5/487:488, 1/5/665:669 | Major groove intercalation | geometric IL_1NBS_009 IL_82107.5 | |
| IL_7OYD_023 | 1/5/491:493, 1/5/661:662 | Single bulged U | geometric IL_3WBM_001 IL_89505.4 | |
| IL_7OYD_024 | 1/5/508:510, 1/5/649:650 | Single bulged A | geometric IL_6WPI_001 IL_31462.7 | |
| IL_7OYD_025 | 1/5/709:710, 1/5/1290:1292 | Single bulged G | geometric IL_4LFB_036 IL_00225.14 | |
| IL_7OYD_026 | 1/5/723:724, 1/5/945:948 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_7OYD_027 | 1/5/727:731, 1/5/941:942 | No text annotation | ||
| IL_7OYD_028 | 1/5/732:735, 1/5/930:940 | No text annotation | ||
| IL_7OYD_029 | 1/5/736:739, 1/5/925:929 | No text annotation | ||
| IL_7OYD_030 | 1/5/740:743, 1/5/921:924 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_7OYD_031 | 1/5/745:752, 1/5/911:919 | No text annotation | geometric IL_5TBW_020 NA | |
| IL_7OYD_032 | 1/5/1078:1080, 1/5/1238:1240 | Isolated non-canonical cWW contact | geometric IL_5UNE_009 IL_44465.1 | |
| IL_7OYD_033 | 1/5/1081:1084, 1/5/1223:1237 | No text annotation | ||
| IL_7OYD_034 | 1/5/1086:1088, 1/5/1217:1221 | Isolated cWS basepair | geometric IL_4TS2_003 NA | |
| IL_7OYD_035 | 1/5/1090:1091, 1/5/1213:1215 | Single bulged C | geometric IL_3W3S_001 IL_61258.15 | |
| IL_7OYD_036 | 1/5/1101:1103, 1/5/1200:1203 | No text annotation | ||
| IL_7OYD_257 | 1/5/1177:1179, 1/5/1190:1192 | Isolated cWH basepair | geometric IL_2R1S_002 IL_10167.6 | |
| IL_7OYD_040 | 1/5/1361:1364, 1/5/1383:1386 | No text annotation | ||
| IL_7OYD_258 | 1/5/1361:1365, 1/5/1380:1386 | No text annotation | ||
| IL_7OYD_041 | 1/5/1364:1365, 1/5/1380:1383 | Major groove intercalation | geometric IL_1NBS_009 IL_82107.5 | |
| IL_7OYD_042 | 1/5/1429:1433, 1/5/1459:1464 | No text annotation | geometric IL_1M5K_001 IL_80926.1 | |
| IL_7OYD_043 | 1/5/1435:1438, 1/5/1454:1457 | Double sheared | geometric IL_4KZD_002 IL_09705.15 | |
| IL_7OYD_044 | 1/5/1439:1441, 1/5/1452:1453 | Single bulged C | geometric IL_3DIL_001 IL_61258.15 | |
| IL_7OYD_045 | 1/5/1471:1472, 1/5/1500:1502 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_7OYD_046 | 1/5/1478:1480, 1/5/1493:1494 | Single base bend | geometric IL_5IBB_340 IL_90729.1 | |
| IL_7OYD_259 | 1/5/1524:1526, 1/5/1659:1661 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 IL_87907.2 | |
| IL_7OYD_260 | 1/5/1526:1530, 1/5/1652:1659 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_7OYD_048 | 1/5/1554:1555, 1/5/1580:1582 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_7OYD_049 | 1/5/1555:1559, 1/5/1576:1580 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_7OYD_261 | 1/5/1590:1593, 1/5/1609:1611 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_7OYD_051 | 1/5/1594:1596, 1/5/1607:1608 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_7OYD_052 | 1/5/1628:1630, 1/5/1640:1644 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_7OYD_053 | 1/5/1675:1677, 1/5/1686:1688 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_7OYD_054 | 1/5/1690:1692, 1/5/1852:1855 | No text annotation | ||
| IL_7OYD_056 | 1/5/1727:1729, 1/5/1842:1843 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_7OYD_262 | 1/5/1736:1741, 1/5/1796:1801 | No text annotation | ||
| IL_7OYD_058 | 1/5/1741:1742, 1/5/1794:1796 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_7OYD_059 | 1/5/1743:1748, 1/5/1790:1793 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_7OYD_263 | 1/5/1750:1753, 1/5/1785:1788 | No text annotation | homologous IL_8C3A_481 NA | |
| IL_7OYD_061 | 1/5/1753:1755, 1/5/1783:1785 | Isolated non-canonical cWW pair | geometric IL_4LFB_059 IL_87907.2 | |
| IL_7OYD_062 | 1/5/1818:1820, 1/5/1827:1828 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_7OYD_264 | 1/5/1862:1864, 1/5/1878:1880 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_87907.2 | |
| IL_7OYD_266 | 1/5/1909:1913, 1/5/2071:2075 | UAA/GAN | homologous IL_8P9A_276 IL_38507.2 | |
| IL_7OYD_066 | 1/5/1915:1922, 1/5/2068:2069 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_7OYD_067 | 1/5/1922:1924, 1/5/2067:2068 | Single bulged G | geometric IL_7D7V_002 IL_00225.14 | |
| IL_7OYD_068 | 1/5/1924:1926, 1/5/2066:2067 | No text annotation | ||
| IL_7OYD_069 | 1/5/1930:1937, 1/5/2057:2062 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_7OYD_070 | 1/5/1937:1948, 1/5/2042:2057 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7OYD_071 | 1/5/1950:1952, 1/5/2039:2040 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_7OYD_072 | 1/5/1961:1969, 1/5/2026:2030 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_7OYD_073 | 1/5/1977:1981, 1/5/1993:1997 | No text annotation | homologous IL_8C3A_058 NA | |
| IL_7OYD_074 | 1/5/2005:2009, 1/5/2018:2020 | Major groove platform with extra cWW | homologous IL_8C3A_059 NA | |
| IL_7OYD_075 | 1/5/2087:2089, 1/5/2276:2277 | Single bulged U | geometric IL_4LFB_046 IL_89505.4 | |
| IL_7OYD_076 | 1/5/2294:2296, 1/5/2346:2349 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7OYD_078 | 1/5/2303:2305, 1/5/2338:2339 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_7OYD_079 | 1/5/2306:2313, 1/5/2333:2337 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_7OYD_080 | 1/5/2316:2318, 1/5/2329:2330 | Single bulged A | geometric IL_7RQB_033 NA | |
| IL_7OYD_267 | 1/5/2362:2368, 1/5/3862:3867 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8P9A_289 IL_26307.2 | |
| IL_7OYD_081 | 1/5/2419:2423, 1/5/2431:2433 | C-loop | geometric IL_7A0S_047 IL_83150.2 | |
| IL_7OYD_082 | 1/5/2450:2454, 1/5/2513:2518 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_7OYD_083 | 1/5/2481:2483, 1/5/2503:2504 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_7OYD_086 | 1/5/2553:2554, 1/5/2772:2774 | Single bulged U | geometric IL_2A64_002 IL_89505.4 | |
| IL_7OYD_087 | 1/5/2593:2597, 1/5/2756:2760 | Triple sheared | homologous IL_8P9A_295 IL_50730.2 | |
| IL_7OYD_088 | 1/5/2617:2618, 1/5/2728:2730 | Single bulged C | homologous IL_8C3A_075 NA | |
| IL_7OYD_089 | 1/5/2618:2619, 1/5/2726:2728 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_7OYD_090 | 1/5/2650:2652, 1/5/2689:2692 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_85599.2 | |
| IL_7OYD_091 | 1/5/2655:2657, 1/5/2685:2686 | Single bulged G | geometric IL_3NDB_004 IL_00225.14 | |
| IL_7OYD_092 | 1/5/2660:2666, 1/5/2676:2682 | No text annotation | homologous IL_8C3A_079 NA | |
| IL_7OYD_093 | 1/5/2836:2842, 1/5/3854:3857 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_7OYD_094 | 1/5/2848:2850, 1/5/3846:3848 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_7OYD_095 | 1/5/2851:2854, 1/5/3844:3845 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_7OYD_268 | 1/5/2851:2859, 1/5/3841:3845 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_7OYD_096 | 1/5/2854:2859, 1/5/3841:3844 | Intercalated tWH | geometric IL_4V9F_062 IL_76758.2 | |
| IL_7OYD_097 | 1/5/2871:2876, 1/5/2881:2887 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_7OYD_098 | 1/5/2893:2895, 1/5/3614:3616 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_7OYD_099 | 1/5/2900:2901, 1/5/3606:3609 | No text annotation | geometric IL_5TBW_080 NA | |
| IL_7OYD_100 | 1/5/3636:3637, 1/5/3831:3833 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_7OYD_101 | 1/5/3664:3669, 1/5/3681:3688 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_7OYD_102 | 1/5/3704:3707, 1/5/3753:3754 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_7OYD_103 | 1/5/3708:3709, 1/5/3749:3752 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_7OYD_269 | 1/5/3719:3725, 1/5/3736:3742 | No text annotation | homologous IL_8P9A_316 IL_88116.2 | |
| IL_7OYD_106 | 1/5/3784:3785, 1/5/3815:3818 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_7OYD_270 | 1/5/3785:3796, 1/5/3812:3815 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_7OYD_108 | 1/5/3899:3902, 1/5/4567:4569 | No text annotation | homologous IL_8P9A_319 IL_55516.2 | |
| IL_7OYD_110 | 1/5/3904:3906, 1/5/4562:4565 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_7OYD_111 | 1/5/3917:3919, 1/5/4392:4393 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_7OYD_112 | 1/5/3920:3921, 1/5/4388:4391 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_7OYD_114 | 1/5/3931:3933, 1/5/4185:4188 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_7OYD_115 | 1/5/4086:4092, 1/5/4165:4168 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_7OYD_116 | 1/5/4195:4196, 1/5/4206:4208 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_7OYD_117 | 1/5/4247:4249, 1/5/4267:4271 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_7OYD_271 | 1/5/4295:4297, 1/5/4321:4322 | No text annotation | ||
| IL_7OYD_119 | 1/5/4299:4302, 1/5/4316:4319 | No text annotation | homologous IL_8P9A_327 IL_85033.2 | |
| IL_7OYD_120 | 1/5/4351:4354, 1/5/4368:4369 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_7OYD_272 | 1/5/4404:4405, 1/5/4446:4448 | Major groove platform | homologous IL_8P9A_329 IL_48076.6 | |
| IL_7OYD_273 | 1/5/4405:4409, 1/5/4443:4446 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_7OYD_122 | 1/5/4409:4411, 1/5/4439:4443 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
| IL_7OYD_123 | 1/5/4416:4420, 1/5/4430:4434 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_7OYD_124 | 1/5/4457:4458, 1/5/4530:4532 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_7OYD_125 | 1/5/4460:4462, 1/5/4524:4528 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_7OYD_126 | 1/5/4462:4463, 1/5/4521:4524 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_7OYD_127 | 1/5/4470:4472, 1/5/4493:4495 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_7OYD_274 | 1/5/4470:4474, 1/5/4489:4495 | No text annotation | ||
| IL_7OYD_128 | 1/5/4472:4474, 1/5/4489:4493 | No text annotation | geometric IL_3DD2_004 IL_55516.2 | |
| IL_7OYD_130 | 1/5/4499:4501, 1/5/4507:4509 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_7OYD_131 | 1/5/4541:4542, 1/5/4551:4553 | Single bulged A | geometric IL_1U9S_001 IL_31462.7 | |
| IL_7OYD_132 | 1/5/4584:4586, 1/5/4725:4727 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_7OYD_133 | 1/5/4586:4589, 1/5/4721:4725 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_7OYD_275 | 1/5/4594:4596, 1/5/4622:4624 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_28037.2 | |
| IL_7OYD_134 | 1/5/4600:4607, 1/5/4612:4618 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_7OYD_136 | 1/5/4628:4633, 1/5/4673:4677 | No text annotation | ||
| IL_7OYD_276 | 1/5/4636:4641, 1/5/4666:4670 | No text annotation | homologous IL_8P9A_346 IL_21001.1 | |
| IL_7OYD_138 | 1/5/4642:4644, 1/5/4663:4665 | Isolated cWH basepair | geometric IL_3R1C_018 IL_10167.6 | |
| IL_7OYD_139 | 1/5/4645:4646, 1/5/4659:4662 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_7OYD_140 | 1/5/4684:4689, 1/5/4709:4714 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
| IL_7OYD_141 | 1/5/4743:4747, 1/5/4961:4964 | No text annotation | ||
| IL_7OYD_277 | 1/5/4743:4750, 1/5/4958:4964 | No text annotation | ||
| IL_7OYD_142 | 1/5/4747:4750, 1/5/4958:4961 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_7OYD_143 | 1/5/4760:4770, 1/5/4872:4881 | No text annotation | homologous IL_8P9A_352 IL_42231.1 | |
| IL_7OYD_144 | 1/5/4889:4892, 1/5/4935:4938 | Tandem non-canonical cWW pairs | geometric IL_4K27_002 IL_77658.1 | |
| IL_7OYD_145 | 1/5/4976:4979, 1/5/4987:4990 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_7OYD_146 | 1/5/4996:4998, 1/5/5061:5063 | Isolated non-canonical cWW pair | geometric IL_3IVK_002 IL_87907.2 | |
| IL_7OYD_147 | 1/5/5000:5001, 1/5/5057:5059 | No text annotation | ||
| IL_7OYD_148 | 1/5/5004:5006, 1/5/5049:5054 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_7OYD_149 | 1/5/5007:5013, 1/5/5043:5048 | No text annotation | ||
| IL_7OYD_150 | 1/5/5016:5018, 1/5/5039:5040 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_7OYD_151 | 1/5/5018:5021, 1/5/5036:5039 | Double sheared | geometric IL_4V9F_100 IL_09705.15 | |
| IL_7OYD_152 | 1/8/64:66, 1/8/92:95 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_7OYD_153 | 1/9/23:25, 1/9/649:651 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_87907.2 | |
| IL_7OYD_155 | 1/9/34:36, 1/9/519:521 | Isolated non-canonical cWW pair | geometric IL_6IA2_002 IL_87907.2 | |
| IL_7OYD_156 | 1/9/37:40, 1/9/514:518 | Double sheared | geometric IL_4WF9_016 IL_09705.15 | |
| IL_7OYD_157 | 1/9/41:47, 1/9/479:481 | No text annotation | geometric IL_4V88_387 NA | |
| IL_7OYD_158 | 1/9/49:51, 1/9/476:477 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_7OYD_159 | 1/9/57:62, 1/9/86:88 | No text annotation | geometric IL_4V88_389 NA | |
| IL_7OYD_294 | 1/9/63:68, 1/9/81:85 | No text annotation | homologous IL_8P9A_379 IL_21667.1 | |
| IL_7OYD_161 | 1/9/108:110, 1/9/351:353 | Isolated non-canonical cWW pair | geometric IL_4P3U_006 IL_28037.2 | |
| IL_7OYD_278 | 1/9/108:112, 1/9/349:353 | Triple non-canonical cWW pairs | geometric IL_8S95_002 IL_49751.4 | |
| IL_7OYD_162 | 1/9/110:112, 1/9/349:351 | No text annotation | geometric IL_353D_001 NA | |
| IL_7OYD_163 | 1/9/112:115, 1/9/348:349 | Multiple bulged bases | geometric IL_5WLH_001 IL_82107.5 | |
| IL_7OYD_279 | 1/9/116:121, 1/9/343:347 | No text annotation | homologous IL_8P9A_382 IL_29223.1 | |
| IL_7OYD_165 | 1/9/130:144, 1/9/175:182 | No text annotation | ||
| IL_7OYD_280 | 1/9/145:151, 1/9/167:174 | No text annotation | homologous IL_8P9A_383 IL_80604.6 | |
| IL_7OYD_281 | 1/9/152:154, 1/9/164:166 | No text annotation | homologous IL_8P9A_384 IL_44465.1 | |
| IL_7OYD_168 | 1/9/188:192, 1/9/207:211 | Triple sheared | geometric IL_4V9F_085 IL_17948.2 | |
| IL_7OYD_169 | 1/9/216:219, 1/9/302:309 | No text annotation | geometric IL_1GID_008 NA | |
| IL_7OYD_170 | 1/9/223:288, 1/9/295:298 | No text annotation | ||
| IL_7OYD_171 | 1/9/312:314, 1/9/336:337 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_7OYD_172 | 1/9/317:319, 1/9/332:333 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_7OYD_173 | 1/9/359:364, 1/9/396:403 | Kink-turn with non-sequential stacking | geometric IL_5J7L_014 IL_46174.3 | |
| IL_7OYD_174 | 1/9/366:371, 1/9/393:394 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_7OYD_175 | 1/9/411:413, 1/9/424:429 | No text annotation | geometric IL_4V88_404 NA | |
| IL_7OYD_176 | 1/9/437:439, 1/9/454:456 | Isolated cWH basepair | geometric IL_4V88_405 NA | |
| IL_7OYD_177 | 1/9/459:461, 1/9/468:470 | Isolated near basepair | geometric IL_3NJ7_004 IL_42997.3 | |
| IL_7OYD_178 | 1/9/487:489, 1/9/511:512 | Single bulged U | geometric IL_4V88_407 NA | |
| IL_7OYD_283 | 1/9/491:495, 1/9/508:509 | C-loop | homologous IL_8C3A_416 NA | |
| IL_7OYD_180 | 1/9/495:496, 1/9/506:508 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_7OYD_181 | 1/9/529:530, 1/9/554:556 | Single bulged A | geometric IL_6WPI_001 IL_31462.7 | |
| IL_7OYD_182 | 1/9/535:538, 1/9/545:549 | No text annotation | geometric IL_1CSL_001 IL_25872.4 | |
| IL_7OYD_183 | 1/9/563:565, 1/9/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_7OYD_184 | 1/9/566:569, 1/9/581:584 | No text annotation | geometric IL_7LO9_004 NA | |
| IL_7OYD_185 | 1/9/599:608, 1/9/635:637 | Other IL | geometric IL_7A0S_092 IL_08770.1 | |
| IL_7OYD_186 | 1/9/611:617, 1/9/624:632 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_7OYD_187 | 1/9/663:665, 1/9/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_7OYD_188 | 1/9/665:671, 1/9/1161:1162 | No text annotation | geometric IL_4LFB_022 IL_38186.6 | |
| IL_7OYD_189 | 1/9/673:675, 1/9/1030:1032 | Isolated non-canonical cWW pair | geometric IL_1YZ9_002 IL_87907.2 | |
| IL_7OYD_190 | 1/9/676:680, 1/9/1025:1029 | tSH-tHW-tHS | geometric IL_4V88_418 NA | |
| IL_7OYD_284 | 1/9/692:694, 1/9/732:734 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_87907.2 | |
| IL_7OYD_192 | 1/9/745:749, 1/9/794:796 | Not an internal loop | geometric IL_5VCI_005 NA | |
| IL_7OYD_193 | 1/9/752:754, 1/9/790:791 | No text annotation | ||
| IL_7OYD_194 | 1/9/802:803, 1/9/860:863 | Major groove minor groove platform; mini C-loop | geometric IL_4V88_423 NA | |
| IL_7OYD_195 | 1/9/805:807, 1/9/856:858 | Isolated non-canonical cWW pair | geometric IL_4ZC7_004 IL_87907.2 | |
| IL_7OYD_196 | 1/9/807:815, 1/9/849:856 | No text annotation | geometric IL_4V88_425 NA | |
| IL_7OYD_197 | 1/9/874:876, 1/9/910:912 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 IL_87907.2 | |
| IL_7OYD_198 | 1/9/877:879, 1/9/907:909 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_7OYD_199 | 1/9/922:923, 1/9/1019:1022 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_7OYD_286 | 1/9/925:926, 1/9/1015:1017 | Single bulged U | geometric IL_3NDB_005 IL_89505.4 | |
| IL_7OYD_201 | 1/9/928:931, 1/9/1010:1013 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_7OYD_202 | 1/9/931:935, 1/9/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_7OYD_203 | 1/9/942:945, 1/9/981:984 | Tandem non-canonical cWW pairs | geometric IL_4V88_432 NA | |
| IL_7OYD_204 | 1/9/952:956, 1/9/967:974 | Kink-turn | geometric IL_4V88_434 NA | |
| IL_7OYD_205 | 1/9/1042:1047, 1/9/1071:1073 | Other IL | geometric IL_4V88_435 NA | |
| IL_7OYD_206 | 1/9/1047:1051, 1/9/1067:1071 | tSH-tHW-tHS | geometric IL_5J7L_037 IL_17136.7 | |
| IL_7OYD_207 | 1/9/1091:1093, 1/9/1152:1158 | No text annotation | geometric IL_4V88_437 NA | |
| IL_7OYD_208 | 1/9/1098:1101, 1/9/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_7OYD_209 | 1/9/1101:1103, 1/9/1129:1131 | Isolated non-canonical cWW pair | geometric IL_1YZ9_002 IL_87907.2 | |
| IL_7OYD_210 | 1/9/1108:1110, 1/9/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_7OYD_211 | 1/9/1168:1175, 1/9/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_4V88_440 NA | |
| IL_7OYD_212 | 1/9/1203:1204, 1/9/1694:1696 | Single bulged A | geometric IL_4LFB_035 IL_31462.7 | |
| IL_7OYD_213 | 1/9/1206:1208, 1/9/1691:1692 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_7OYD_214 | 1/9/1214:1217, 1/9/1681:1685 | C-loop | geometric IL_4V88_443 NA | |
| IL_7OYD_215 | 1/9/1230:1232, 1/9/1526:1528 | Isolated non-canonical cWW pair | geometric IL_4V88_444 NA | |
| IL_7OYD_216 | 1/9/1235:1236, 1/9/1521:1523 | Minor groove platform | geometric IL_4V88_445 NA | |
| IL_7OYD_217 | 1/9/1270:1272, 1/9/1510:1512 | Isolated non-canonical cWW pair | geometric IL_5MWI_006 NA | |
| IL_7OYD_218 | 1/9/1281:1287, 1/9/1314:1316 | No text annotation | ||
| IL_7OYD_288 | 1/9/1281:1290, 1/9/1309:1316 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_7OYD_219 | 1/9/1287:1290, 1/9/1309:1314 | No text annotation | ||
| IL_7OYD_220 | 1/9/1291:1294, 1/9/1305:1308 | No text annotation | ||
| IL_7OYD_221 | 1/9/1325:1327, 1/9/1502:1503 | Single bulged U | geometric IL_3MEI_001 IL_89505.4 | |
| IL_7OYD_222 | 1/9/1329:1333, 1/9/1498:1500 | Isolated cWS basepair | geometric IL_4V88_450 NA | |
| IL_7OYD_289 | 1/9/1329:1335, 1/9/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_7OYD_223 | 1/9/1333:1335, 1/9/1492:1498 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_7OYD_290 | 1/9/1337:1338, 1/9/1488:1490 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_7OYD_225 | 1/9/1347:1349, 1/9/1380:1382 | Isolated cWH basepair | geometric IL_4V88_453 NA | |
| IL_7OYD_291 | 1/9/1363:1365, 1/9/1374:1375 | Minor groove platform | homologous IL_8C3A_460 NA | |
| IL_7OYD_227 | 1/9/1395:1399, 1/9/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_85033.2 | |
| IL_7OYD_295 | 1/9/1402:1405, 1/9/1441:1444 | No text annotation | homologous IL_8CRE_481 IL_78800.1 | |
| IL_7OYD_229 | 1/9/1412:1413, 1/9/1427:1429 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_7OYD_230 | 1/9/1537:1539, 1/9/1594:1596 | Isolated non-canonical cWW pair | geometric IL_4P3T_001 NA | |
| IL_7OYD_292 | 1/9/1541:1550, 1/9/1582:1592 | No text annotation | ||
| IL_7OYD_231 | 1/9/1550:1558, 1/9/1577:1582 | 180 degree turn | geometric IL_5J7L_055 IL_11344.2 | |
| IL_7OYD_232 | 1/9/1560:1562, 1/9/1573:1575 | Isolated non-canonical cWW pair | geometric IL_5TBW_016 NA | |
| IL_7OYD_233 | 1/9/1604:1610, 1/9/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_7OYD_234 | 1/9/1700:1702, 1/9/1833:1836 | No text annotation | geometric IL_4V88_463 NA | |
| IL_7OYD_235 | 1/9/1702:1705, 1/9/1829:1833 | No text annotation | homologous IL_8C3A_471 NA | |
| IL_7OYD_236 | 1/9/1706:1708, 1/9/1826:1828 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_7OYD_237 | 1/9/1708:1711, 1/9/1822:1826 | No text annotation | homologous IL_8C3A_473 NA | |
| IL_7OYD_238 | 1/9/1714:1716, 1/9/1817:1819 | Isolated non-canonical cWW pair | geometric IL_4V88_467 NA | |
| IL_7OYD_239 | 1/9/1717:1720, 1/9/1813:1816 | Double sheared | geometric IL_4V88_468 NA | |
| IL_7OYD_240 | 1/9/1720:1722, 1/9/1812:1813 | Single bulged U | homologous IL_8C3A_476 NA | |
| IL_7OYD_242 | 1/9/1729:1731, 1/9/1803:1805 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_07785.1 | |
| IL_7OYD_243 | 1/9/1733:1736, 1/9/1798:1801 | Double sheared | geometric IL_4V88_471 NA | |
| IL_7OYD_244 | 1/9/1739:1741, 1/9/1793:1795 | Isolated non-canonical cWW pair | geometric IL_5AOX_001 IL_87907.2 | |
| IL_7OYD_245 | 1/9/1742:1746, 1/9/1788:1792 | Triple sheared | geometric IL_2A64_006 IL_50730.2 | |
| IL_7OYD_246 | 1/9/1750:1751, 1/9/1782:1784 | No text annotation | ||
| IL_7OYD_247 | 1/9/1751:1752, 1/9/1780:1782 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_7OYD_249 | 1/K/15:16, 1/K/62:64 | Single bulged C | geometric IL_3W3S_001 IL_61258.15 | |
| IL_7OYD_250 | 1/K/21:27, 1/K/52:57 | Minor groove platform related | geometric IL_5TBW_373 NA | |
| IL_7OYD_251 | 1/K/28:29, 1/K/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_7OYD_252 | 1/K/32:36, 1/K/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_7OYD_253 | 1/K/71:78, 1/K/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_04346.10 | |
| IL_7OYD_254 | 1/K/79:81, 1/K/95:97 | Isolated non-canonical cWW pair | geometric IL_5TBW_034 NA | |
| IL_7OYD_255 | 1/K/82:85, 1/K/92:94 | Isolated non-canonical cWW pair | geometric IL_5TBW_378 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7OYD_010 | No text annotation | ||
| IL_7OYD_021 | No text annotation | ||
| IL_7OYD_037 | No text annotation | ||
| IL_7OYD_038 | No text annotation | ||
| IL_7OYD_039 | Isolated non-canonical cWW pair | ||
| IL_7OYD_047 | No text annotation | ||
| IL_7OYD_050 | No text annotation | ||
| IL_7OYD_055 | No text annotation | ||
| IL_7OYD_057 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_7OYD_060 | No text annotation | ||
| IL_7OYD_063 | Tandem non-canonical cWW pairs | ||
| IL_7OYD_265 | No text annotation | ||
| IL_7OYD_064 | Tandem non-canonical cWW pairs | ||
| IL_7OYD_065 | No text annotation | ||
| IL_7OYD_077 | Isolated non-canonical cWW pair | ||
| IL_7OYD_084 | Isolated non-canonical cWW pair | ||
| IL_7OYD_085 | Isolated non-canonical cWW pair | ||
| IL_7OYD_104 | No text annotation | ||
| IL_7OYD_105 | No text annotation | ||
| IL_7OYD_107 | No text annotation | ||
| IL_7OYD_109 | Isolated non-canonical cWW pair | ||
| IL_7OYD_113 | Isolated non-canonical cWW pair | ||
| IL_7OYD_118 | Decoding loop related | ||
| IL_7OYD_121 | No text annotation | ||
| IL_7OYD_129 | Isolated non-canonical cWW pair | ||
| IL_7OYD_135 | Isolated non-canonical cWW pair | ||
| IL_7OYD_137 | No text annotation | ||
| IL_7OYD_154 | Intercalated cWW | ||
| IL_7OYD_160 | No text annotation | ||
| IL_7OYD_164 | No text annotation | ||
| IL_7OYD_166 | No text annotation | ||
| IL_7OYD_167 | Tandem non-canonical cWW pairs | ||
| IL_7OYD_282 | Triple non-canonical cWW pairs | ||
| IL_7OYD_179 | No text annotation | ||
| IL_7OYD_191 | Tandem non-canonical cWW pairs | ||
| IL_7OYD_285 | No text annotation | ||
| IL_7OYD_200 | Tandem non-canonical cWW pairs | ||
| IL_7OYD_287 | No text annotation | ||
| IL_7OYD_224 | Isolated non-canonical cWW pair | ||
| IL_7OYD_226 | Isolated non-canonical cWW pair | ||
| IL_7OYD_228 | No text annotation | ||
| IL_7OYD_241 | Isolated non-canonical cWW pair | ||
| IL_7OYD_293 | Triple sheared | ||
| IL_7OYD_248 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7OYD_001 | 1/5/112:116, 1/5/155:160, 1/5/275:278 | No text annotation | ||
| J3_7OYD_034 | 1/5/351:367, 1/5/374:379, 1/8/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_7OYD_002 | 1/5/380:387, 1/5/414:415, 1/8/19:20 | No text annotation | geometric J3_5TBW_002 NA | |
| J3_7OYD_035 | 1/5/380:390, 1/5/401:415, 1/8/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_7OYD_036 | 1/5/451:455, 1/5/701:705, 1/5/1296:1300 | No text annotation | ||
| J3_7OYD_004 | 1/5/1535:1541, 1/5/1626:1628, 1/5/1644:1647 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_7OYD_005 | 1/5/1549:1552, 1/5/1584:1588, 1/5/1613:1618 | No text annotation | homologous J3_8P9A_050 J3_21998.1 | |
| J3_7OYD_006 | 1/5/1730:1731, 1/5/1806:1810, 1/5/1836:1841 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
| J3_7OYD_044 | 1/5/1973:1975, 1/5/1999:2005, 1/5/2020:2022 | No text annotation | homologous J3_8P9A_052 J3_28621.5 | |
| J3_7OYD_008 | 1/5/2397:2403, 1/5/2809:2811, 1/5/2823:2826 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_7OYD_009 | 1/5/2406:2409, 1/5/2789:2795, 1/5/2804:2806 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_7OYD_010 | 1/5/2444:2449, 1/5/2519:2523, 1/5/2540:2541 | No text annotation | homologous J3_8P9A_055 J3_31965.2 | |
| J3_7OYD_011 | 1/5/2555:2559, 1/5/2576:2579, 1/5/2761:2771 | No text annotation | ||
| J3_7OYD_012 | 1/5/2579:2580, 1/5/2589:2593, 1/5/2760:2761 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_7OYD_037 | 1/5/2602:2606, 1/5/2741:2742, 1/5/2746:2751 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_7OYD_013 | 1/5/3941:3943, 1/5/4078:4082, 1/5/4172:4177 | No text annotation | ||
| J3_7OYD_038 | 1/5/4095:4098, 1/5/4118:4133, 1/5/4159:4162 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_7OYD_039 | 1/5/4232:4234, 1/5/4335:4346, 1/5/4374:4379 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_7OYD_016 | 1/5/4245:4247, 1/5/4271:4273, 1/5/4282:4287 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_7OYD_017 | 1/5/4467:4470, 1/5/4495:4497, 1/5/4511:4517 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_7OYD_040 | 1/5/4753:4758, 1/5/4883:4887, 1/5/4940:4955 | No text annotation | ||
| J3_7OYD_018 | 1/5/4974:4976, 1/5/4990:4995, 1/5/5064:5067 | No text annotation | ||
| J3_7OYD_019 | 1/8/44:45, 1/8/58:64, 1/8/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_7OYD_020 | 1/9/40:41, 1/9/481:487, 1/9/512:514 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_7OYD_041 | 1/9/40:47, 1/9/479:487, 1/9/512:514 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
| J3_7OYD_045 | 1/9/682:684, 1/9/918:922, 1/9/1022:1023 | No text annotation | geometric J3_8P9A_071 J3_56052.5 | |
| J3_7OYD_046 | 1/9/682:684, 1/9/918:923, 1/9/1019:1023 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_7OYD_022 | 1/9/816:819, 1/9/829:831, 1/9/843:848 | No text annotation | homologous J3_8C3A_035 NA | |
| J3_7OYD_023 | 1/9/938:941, 1/9/985:993, 1/9/1000:1004 | No text annotation | homologous J3_8P9A_074 J3_76375.1 | |
| J3_7OYD_024 | 1/9/1094:1096, 1/9/1136:1140, 1/9/1147:1151 | No text annotation | ||
| J3_7OYD_025 | 1/9/1218:1221, 1/9/1645:1651, 1/9/1673:1680 | No text annotation | homologous J3_8P9A_076 J3_25303.4 | |
| J3_7OYD_026 | 1/9/1225:1228, 1/9/1530:1532, 1/9/1638:1641 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_7OYD_027 | 1/9/1237:1244, 1/9/1255:1266, 1/9/1516:1520 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_7OYD_043 | 1/9/1270:1277, 1/9/1320:1324, 1/9/1504:1512 | No text annotation | ||
| J3_7OYD_028 | 1/9/1272:1277, 1/9/1320:1324, 1/9/1504:1510 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_7OYD_029 | 1/9/1340:1345, 1/9/1384:1389, 1/9/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_99563.1 | |
| J3_7OYD_030 | 1/9/1350:1351, 1/9/1360:1363, 1/9/1375:1379 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_7OYD_031 | 1/9/1391:1395, 1/9/1450:1456, 1/9/1470:1479 | No text annotation | ||
| J3_7OYD_032 | 1/9/1532:1536, 1/9/1597:1604, 1/9/1635:1638 | No text annotation | homologous J3_8C3A_044 NA | |
| J3_7OYD_033 | 1/K/9:14, 1/K/65:66, 1/K/109:110 | No text annotation | homologous J3_7RQB_015 NA | |
| J4_7OYD_001 | 1/5/111:112, 1/5/278:283, 1/5/304:310, 1/5/327:330 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_7OYD_002 | 1/5/712:713, 1/5/958:964, 1/5/974:981, 1/5/1282:1288 | No text annotation | ||
| J4_7OYD_003 | 1/5/2369:2375, 1/5/2393:2395, 1/5/2828:2833, 1/5/3860:3861 | No text annotation | ||
| J4_7OYD_004 | 1/5/2410:2414, 1/5/2438:2443, 1/5/2542:2543, 1/5/2781:2788 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_7OYD_005 | 1/5/2622:2623, 1/5/2641:2646, 1/5/2696:2702, 1/5/2722:2723 | No text annotation | ||
| J4_7OYD_006 | 1/5/3638:3642, 1/5/3654:3658, 1/5/3694:3698, 1/5/3825:3830 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_7OYD_007 | 1/5/3700:3702, 1/5/3756:3757, 1/5/3775:3784, 1/5/3818:3823 | No text annotation | homologous J4_8P9A_018 J4_93343.1 | |
| J4_7OYD_008 | 1/5/4235:4239, 1/5/4293:4295, 1/5/4322:4323, 1/5/4332:4334 | No text annotation | ||
| J4_7OYD_009 | 1/5/4235:4239, 1/5/4293:4297, 1/5/4321:4323, 1/5/4332:4334 | No text annotation | homologous J4_8P9A_019 J4_04930.6 | |
| J4_7OYD_010 | 1/5/4591:4594, 1/5/4624:4625, 1/5/4680:4682, 1/5/4716:4719 | No text annotation | ||
| J4_7OYD_011 | 1/9/98:106, 1/9/355:357, 1/9/405:409, 1/9/431:432 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_7OYD_012 | 1/9/671:673, 1/9/1032:1037, 1/9/1078:1089, 1/9/1160:1161 | No text annotation | homologous J4_8C3A_022 NA | |
| J5_7OYD_001 | 1/5/19:21, 1/8/35:42, 1/8/101:106, 1/8/113:114, 1/8/136:138 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_7OYD_002 | 1/5/1339:1344, 1/5/1520:1523, 1/5/1662:1665, 1/5/2292:2294, 1/5/2349:2355 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_7OYD_003 | 1/5/2859:2867, 1/5/2891:2892, 1/5/3617:3618, 1/5/3622:3630, 1/5/3839:3841 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_7OYD_004 | 1/5/3907:3914, 1/5/4396:4404, 1/5/4448:4457, 1/5/4532:4538, 1/5/4556:4561 | No text annotation | ||
| J5_7OYD_005 | 1/5/3924:3927, 1/5/4192:4195, 1/5/4208:4209, 1/5/4231:4232, 1/5/4379:4385 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J5_7OYD_006 | 1/9/30:34, 1/9/521:527, 1/9/558:563, 1/9/592:595, 1/9/641:644 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_7OYD_007 | 1/9/30:34, 1/9/521:527, 1/9/558:565, 1/9/585:595, 1/9/641:644 | No text annotation | ||
| J5_7OYD_008 | 1/9/53:56, 1/9/89:96, 1/9/434:436, 1/9/457:461, 1/9/468:474 | No text annotation | ||
| J5_7OYD_009 | 1/9/123:129, 1/9/183:185, 1/9/214:215, 1/9/310:312, 1/9/337:341 | No text annotation | ||
| J5_7OYD_010 | 1/9/685:690, 1/9/736:744, 1/9/797:800, 1/9/865:874, 1/9/912:917 | No text annotation | ||
| J6_7OYD_001 | 1/5/21:26, 1/5/57:67, 1/5/74:78, 1/5/105:109, 1/5/332:339, 1/8/33:35 | No text annotation | ||
| J6_7OYD_002 | 1/5/1356:1359, 1/5/1388:1392, 1/5/1399:1403, 1/5/1422:1425, 1/5/1468:1470, 1/5/1503:1508 | No text annotation | ||
| J6_7OYD_003 | 1/5/3924:3927, 1/5/4192:4195, 1/5/4208:4209, 1/5/4231:4234, 1/5/4335:4346, 1/5/4374:4385 | No text annotation | ||
| J7_7OYD_001 | 1/5/1670:1675, 1/5/1688:1689, 1/5/1856:1859, 1/5/1883:1888, 1/5/1899:1903, 1/5/2081:2082, 1/5/2282:2287 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7OYD_003 | No text annotation | ||
| J3_7OYD_007 | No text annotation | ||
| J3_7OYD_014 | No text annotation | ||
| J3_7OYD_015 | No text annotation | ||
| J3_7OYD_021 | No text annotation | ||
| J3_7OYD_042 | No text annotation |
Coloring options: