HL_7OYD_003
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OYD_003 not in the Motif Atlas
- Homologous match to HL_8C3A_003
- Geometric discrepancy: 0.0751
- The information below is about HL_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_67216.9
- Basepair signature
- cWW-cWW-F-tSH
- Number of instances in this motif group
- 9
Unit IDs
7OYD|1|5|C|89
7OYD|1|5|G|90
7OYD|1|5|G|91
7OYD|1|5|C|92
7OYD|1|5|G|93
7OYD|1|5|A|94
7OYD|1|5|G|95
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- L13
- Chain Q
- RPL18
- Chain a
- uL15
- Chain o
- RPL36A
Coloring options: