HL_7OYD_005

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

7OYD|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.363

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7OYD|1|5|U|204
7OYD|1|5|C|205
7OYD|1|5|U|206
7OYD|1|5|G|207
7OYD|1|5|A|208
7OYD|1|5|U|209
7OYD|1|5|C|210
7OYD|1|5|G|211

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Y

Ribosomal protein L26

Chain e

eL32