HL_7OYD_009
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 7OYD|1|5|G|315, 7OYD|1|5|U|316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OYD_009 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.1446
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
7OYD|1|5|G|314
7OYD|1|5|G|315
7OYD|1|5|U|316
7OYD|1|5|A|317
7OYD|1|5|A|318
7OYD|1|5|A|319
7OYD|1|5|C|320
7OYD|1|5|U|321
7OYD|1|5|C|322
7OYD|1|5|C|323
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain N
- Ribosomal protein L15
- Chain a
- uL15
- Chain i
- 60S ribosomal protein L36
- Chain o
- RPL36A
Coloring options: