HL_7OYD_015

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

C(OMG)UCUUG(1MA)AAC(A2M)CG

Length

14 nucleotides

Bulged bases

7OYD|1|5|C|1329

QA status

Modified nucleotides: OMG, 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_015 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1568

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

7OYD|1|5|C|1319
7OYD|1|5|OMG|1320
7OYD|1|5|U|1321
7OYD|1|5|C|1322
7OYD|1|5|U|1323
7OYD|1|5|U|1324
7OYD|1|5|G|1325
7OYD|1|5|1MA|1326
7OYD|1|5|A|1327
7OYD|1|5|A|1328
7OYD|1|5|C|1329
7OYD|1|5|A2M|1330
7OYD|1|5|C|1331
7OYD|1|5|G|1332

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain a

uL15

Chain e

eL32