HL_7OYD_017
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UGAAGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OYD_017 not in the Motif Atlas
- Homologous match to HL_8C3A_016
- Geometric discrepancy: 0.0572
- The information below is about HL_8C3A_016
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
7OYD|1|5|U|1393
7OYD|1|5|G|1394
7OYD|1|5|A|1395
7OYD|1|5|A|1396
7OYD|1|5|G|1397
7OYD|1|5|G|1398
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- L13
- Chain Q
- RPL18
- Chain a
- uL15
- Chain i
- 60S ribosomal protein L36
Coloring options: