HL_7OYD_020

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

7OYD|1|5|C|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|5|G|1483
7OYD|1|5|C|1484
7OYD|1|5|C|1485
7OYD|1|5|G|1486
7OYD|1|5|C|1487
7OYD|1|5|G|1488
7OYD|1|5|C|1489
7OYD|1|5|C|1490

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

L13

Chain i

60S ribosomal protein L36