HL_7OYD_027

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GG(UR3)AAGC

Length

7 nucleotides

Bulged bases

7OYD|1|5|G|1873

QA status

Modified nucleotides: UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_027 not in the Motif Atlas

Geometric match to HL_5TBW_025

Geometric discrepancy: 0.07

The information below is about HL_5TBW_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OYD|1|5|G|1868
7OYD|1|5|G|1869
7OYD|1|5|UR3|1870
7OYD|1|5|A|1871
7OYD|1|5|A|1872
7OYD|1|5|G|1873
7OYD|1|5|C|1874

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L10