HL_7OYD_031
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CAGUCGGCAGAGCGAGAAAGAGAGUGGGCGGACGCUACG
- Length
- 39 nucleotides
- Bulged bases
- 7OYD|1|5|C|2098, 7OYD|1|5|G|2263, 7OYD|1|5|U|2271, 7OYD|1|5|C|2273
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OYD|1|5|C|2091
7OYD|1|5|A|2092
7OYD|1|5|G|2093
7OYD|1|5|U|2094
7OYD|1|5|C|2095
7OYD|1|5|G|2096
7OYD|1|5|G|2097
7OYD|1|5|C|2098
7OYD|1|5|A|2099
7OYD|1|5|G|2100
7OYD|1|5|A|2101
7OYD|1|5|G|2102
7OYD|1|5|C|2103
7OYD|1|5|G|2104
7OYD|1|5|A|2105
7OYD|1|5|G|2106
7OYD|1|5|A|2107
7OYD|1|5|A|2108
7OYD|1|5|A|2109
7OYD|1|5|G|2110
7OYD|1|5|A|2111
7OYD|1|5|G|2112
7OYD|1|5|A|2113
7OYD|1|5|G|2114
7OYD|1|5|U|2115
7OYD|1|5|G|2116
7OYD|1|5|G|2117
7OYD|1|5|G|2263
7OYD|1|5|C|2264
7OYD|1|5|G|2265
7OYD|1|5|G|2266
7OYD|1|5|A|2267
7OYD|1|5|C|2268
7OYD|1|5|G|2269
7OYD|1|5|C|2270
7OYD|1|5|U|2271
7OYD|1|5|A|2272
7OYD|1|5|C|2273
7OYD|1|5|G|2274
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain E
- 60S ribosomal protein L6
- Chain F
- uL30
- Chain Q
- RPL18
- Chain b
- 60S ribosomal protein L29
- Chain r
- eL28
Coloring options: