HL_7OYD_033
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- ACGA(B8W)AACU
- Length
- 9 nucleotides
- Bulged bases
- 7OYD|1|5|A|2383
- QA status
- Modified nucleotides: B8W
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OYD_033 not in the Motif Atlas
- Homologous match to HL_8C3A_031
- Geometric discrepancy: 0.1506
- The information below is about HL_8C3A_031
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
7OYD|1|5|A|2380
7OYD|1|5|C|2381
7OYD|1|5|G|2382
7OYD|1|5|A|2383
7OYD|1|5|B8W|2384
7OYD|1|5|A|2385
7OYD|1|5|A|2386
7OYD|1|5|C|2387
7OYD|1|5|U|2388
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain P
- 60S ribosomal protein L17
- Chain R
- 60S ribosomal protein L19
- Chain d
- eL31
Coloring options: