HL_7OYD_038

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

7OYD|1|5|U|2635

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_038 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1875

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7OYD|1|5|G|2628
7OYD|1|5|U|2629
7OYD|1|5|U|2630
7OYD|1|5|C|2631
7OYD|1|5|U|2632
7OYD|1|5|C|2633
7OYD|1|5|U|2634
7OYD|1|5|U|2635
7OYD|1|5|U|2636

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

60S ribosomal protein L19

Chain U

RPL22