HL_7OYD_043

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

7OYD|1|5|C|2818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_043 not in the Motif Atlas

Homologous match to HL_8C3A_042

Geometric discrepancy: 0.1332

The information below is about HL_8C3A_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OYD|1|5|U|2814
7OYD|1|5|G|2815
7OYD|1|5|A|2816
7OYD|1|5|A|2817
7OYD|1|5|C|2818
7OYD|1|5|A|2819
7OYD|1|5|G|2820

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

60S ribosomal protein L19