HL_7OYD_048

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

7OYD|1|5|C|3677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_048 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.2008

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OYD|1|5|C|3672
7OYD|1|5|G|3673
7OYD|1|5|C|3674
7OYD|1|5|G|3675
7OYD|1|5|G|3676
7OYD|1|5|C|3677
7OYD|1|5|G|3678

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain G

RPL7A

Chain N

Ribosomal protein L15