HL_7OYD_049
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- G(A2M)AGAAA(PSU)UC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OYD_049 not in the Motif Atlas
- Geometric match to HL_8KAL_008
- Geometric discrepancy: 0.3537
- The information below is about HL_8KAL_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
7OYD|1|5|G|3726
7OYD|1|5|A2M|3727
7OYD|1|5|A|3728
7OYD|1|5|G|3729
7OYD|1|5|A|3730
7OYD|1|5|A|3731
7OYD|1|5|A|3732
7OYD|1|5|PSU|3733
7OYD|1|5|U|3734
7OYD|1|5|C|3735
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain i
- 60S ribosomal protein L36
- Chain o
- RPL36A
- Chain x
- Ribosomal protein uL1
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