HL_7OYD_052

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGGAACG(P7G)GC

Length

10 nucleotides

Bulged bases

7OYD|1|5|A|3880, 7OYD|1|5|A|3881, 7OYD|1|5|C|3882

QA status

Modified nucleotides: P7G

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_052 not in the Motif Atlas

Homologous match to HL_8P9A_162

Geometric discrepancy: 0.0661

The information below is about HL_8P9A_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

7OYD|1|5|G|3877
7OYD|1|5|G|3878
7OYD|1|5|G|3879
7OYD|1|5|A|3880
7OYD|1|5|A|3881
7OYD|1|5|C|3882
7OYD|1|5|G|3883
7OYD|1|5|P7G|3884
7OYD|1|5|G|3885
7OYD|1|5|C|3886

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain e

eL32