HL_7OYD_054
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- C(I4U)G(OMG)GGCGG
- Length
- 9 nucleotides
- Bulged bases
- 7OYD|1|5|G|4199
- QA status
- Modified nucleotides: I4U, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OYD_054 not in the Motif Atlas
- Homologous match to HL_8C3A_055
- Geometric discrepancy: 0.0853
- The information below is about HL_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
7OYD|1|5|C|4197
7OYD|1|5|I4U|4198
7OYD|1|5|G|4199
7OYD|1|5|OMG|4200
7OYD|1|5|G|4201
7OYD|1|5|G|4202
7OYD|1|5|C|4203
7OYD|1|5|G|4204
7OYD|1|5|G|4205
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain b
- 60S ribosomal protein L29
- Chain t
- Eukaryotic translation initiation factor 5A-1
Coloring options: