3D structure

PDB id
7OYD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
Experimental method
ELECTRON MICROSCOPY
Resolution
2.3 Å

Loop

Sequence
UGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7OYD_059 not in the Motif Atlas
Homologous match to HL_8C3A_060
Geometric discrepancy: 0.086
The information below is about HL_8C3A_060
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

7OYD|1|5|U|4325
7OYD|1|5|G|4326
7OYD|1|5|A|4327
7OYD|1|5|A|4328
7OYD|1|5|A|4329
7OYD|1|5|G|4330

Current chains

Chain 5
28S rRNA

Nearby chains

Chain D
60S ribosomal protein L5
Chain T
eL21
Chain o
RPL36A

Coloring options:


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