HL_7OYD_059
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UGAAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OYD_059 not in the Motif Atlas
- Homologous match to HL_8C3A_060
- Geometric discrepancy: 0.086
- The information below is about HL_8C3A_060
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
7OYD|1|5|U|4325
7OYD|1|5|G|4326
7OYD|1|5|A|4327
7OYD|1|5|A|4328
7OYD|1|5|A|4329
7OYD|1|5|G|4330
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain T
- eL21
- Chain o
- RPL36A
Coloring options: