HL_7OYD_060
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUU(E6G)GGUUUUA
- Length
- 11 nucleotides
- Bulged bases
- 7OYD|1|5|U|4358
- QA status
- Modified nucleotides: E6G
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OYD_060 not in the Motif Atlas
- Geometric match to HL_8H1B_001
- Geometric discrepancy: 0.2663
- The information below is about HL_8H1B_001
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_10453.3
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
7OYD|1|5|U|4356
7OYD|1|5|U|4357
7OYD|1|5|U|4358
7OYD|1|5|E6G|4359
7OYD|1|5|G|4360
7OYD|1|5|G|4361
7OYD|1|5|U|4362
7OYD|1|5|U|4363
7OYD|1|5|U|4364
7OYD|1|5|U|4365
7OYD|1|5|A|4366
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- L13
- Chain a
- uL15
- Chain i
- 60S ribosomal protein L36
- Chain o
- RPL36A
Coloring options: