HL_7OYD_063

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUG(PSU)UCA

Length

7 nucleotides

Bulged bases

7OYD|1|5|G|4503

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_063 not in the Motif Atlas

Homologous match to HL_8C3A_064

Geometric discrepancy: 0.2872

The information below is about HL_8C3A_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7OYD|1|5|U|4501
7OYD|1|5|U|4502
7OYD|1|5|G|4503
7OYD|1|5|PSU|4504
7OYD|1|5|U|4505
7OYD|1|5|C|4506
7OYD|1|5|A|4507

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain s1

Dap1b