HL_7OYD_067
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CU(B8K)AACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 7OYD|1|5|G|4698, 7OYD|1|5|C|4702
- QA status
- Modified nucleotides: B8K
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OYD_067 not in the Motif Atlas
- Homologous match to HL_8C3A_068
- Geometric discrepancy: 0.134
- The information below is about HL_8C3A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
7OYD|1|5|C|4692
7OYD|1|5|U|4693
7OYD|1|5|B8K|4694
7OYD|1|5|A|4695
7OYD|1|5|A|4696
7OYD|1|5|C|4697
7OYD|1|5|G|4698
7OYD|1|5|C|4699
7OYD|1|5|C|4700
7OYD|1|5|U|4701
7OYD|1|5|C|4702
7OYD|1|5|U|4703
7OYD|1|5|A|4704
7OYD|1|5|A|4705
7OYD|1|5|G|4706
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L9
- Chain O
- RPL13A
- Chain m
- RPL40
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