HL_7OYD_069

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

7OYD|1|5|U|4980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_069 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1045

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7OYD|1|5|G|4979
7OYD|1|5|U|4980
7OYD|1|5|A|4981
7OYD|1|5|G|4982
7OYD|1|5|A|4983
7OYD|1|5|C|4984
7OYD|1|5|G|4985
7OYD|1|5|A|4986
7OYD|1|5|C|4987

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain P

60S ribosomal protein L17