3D structure

PDB id
7OYD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
Experimental method
ELECTRON MICROSCOPY
Resolution
2.3 Å

Loop

Sequence
CACUG
Length
5 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7OYD_072 not in the Motif Atlas
Homologous match to HL_8C3A_076
Geometric discrepancy: 0.2015
The information below is about HL_8C3A_076
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_22523.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
13

Unit IDs

7OYD|1|8|C|107
7OYD|1|8|A|108
7OYD|1|8|C|109
7OYD|1|8|U|110
7OYD|1|8|G|112

Current chains

Chain 8
5.8S rRNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain X
RPL23A
Chain j
Ribosomal protein L37
Chain l
eL39

Coloring options:


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