HL_7OYD_083

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

7OYD|1|9|A|500, 7OYD|1|9|C|502, 7OYD|1|9|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_083 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1669

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7OYD|1|9|C|498
7OYD|1|9|G|499
7OYD|1|9|A|500
7OYD|1|9|C|501
7OYD|1|9|C|502
7OYD|1|9|C|503
7OYD|1|9|G|504

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain YY

40S ribosomal protein S24