HL_7OYD_085
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- ACUUUAAAUCCUU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OYD_085 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.1804
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7OYD|1|9|A|569
7OYD|1|9|C|570
7OYD|1|9|U|571
7OYD|1|9|U|572
7OYD|1|9|U|573
7OYD|1|9|A|574
7OYD|1|9|A|575
7OYD|1|9|A|576
7OYD|1|9|U|577
7OYD|1|9|C|578
7OYD|1|9|C|579
7OYD|1|9|U|580
7OYD|1|9|U|581
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain EE
- 40S ribosomal protein S4
- Chain JJ
- Ribosomal protein S9 (Predicted)
- Chain YY
- 40S ribosomal protein S24
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