HL_7OYD_108

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGAGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_108 not in the Motif Atlas

Homologous match to HL_4V9F_072

Geometric discrepancy: 0.1185

The information below is about HL_4V9F_072

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

7OYD|1|K|G|86
7OYD|1|K|G|87
7OYD|1|K|A|88
7OYD|1|K|G|89
7OYD|1|K|A|90
7OYD|1|K|C|91

Current chains

Chain K

5S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain I

60S ribosomal protein L10

Chain S

RPL18A