HL_7OYD_114

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AGAAA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_114 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.2502

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

7OYD|1|5|A|3728
7OYD|1|5|G|3729
7OYD|1|5|A|3730
7OYD|1|5|A|3731
7OYD|1|5|A|3732
7OYD|1|5|PSU|3733

Current chains

Chain 5

28S rRNA

Nearby chains

Chain i

60S ribosomal protein L36

Chain o

RPL36A