HL_7OYD_115

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAUUGCAAUUAUUC

Length

14 nucleotides

Bulged bases

7OYD|1|9|U|1621, 7OYD|1|9|U|1622, 7OYD|1|9|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|9|G|1613
7OYD|1|9|A|1614
7OYD|1|9|U|1615
7OYD|1|9|U|1616
7OYD|1|9|G|1617
7OYD|1|9|C|1618
7OYD|1|9|A|1619
7OYD|1|9|A|1620
7OYD|1|9|U|1621
7OYD|1|9|U|1622
7OYD|1|9|A|1623
7OYD|1|9|U|1624
7OYD|1|9|U|1625
7OYD|1|9|C|1626

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Dd

uS14

Chain PP

40S ribosomal protein uS19

Chain SS

40S ribosomal protein uS13

Chain TT

RPS19