HL_7P48_003

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7P48_003 not in the Motif Atlas

Homologous match to HL_6UGG_006

Geometric discrepancy: 0.0833

The information below is about HL_6UGG_006

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

7P48|1|5|G|54
7P48|1|5|U|55
7P48|1|5|U|56
7P48|1|5|C|57
7P48|1|5|A|58
7P48|1|5|A|59
7P48|1|5|A|60
7P48|1|5|U|61
7P48|1|5|C|62

Current chains

Chain 5

P-site tRNA

Nearby chains

Chain 6

ABC-F type ribosomal protection protein

Chain F

50S ribosomal protein L5