HL_7P48_013

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7P48|1|A|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7P48_013 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1345

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

7P48|1|A|C|348
7P48|1|A|U|349
7P48|1|A|G|350
7P48|1|A|G|351
7P48|1|A|A|352
7P48|1|A|A|353
7P48|1|A|A|354
7P48|1|A|G|355

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L24