HL_7P48_034

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

7P48|1|A|C|1362, 7P48|1|A|U|1366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7P48_034 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.0959

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

7P48|1|A|G|1361
7P48|1|A|C|1362
7P48|1|A|U|1363
7P48|1|A|C|1364
7P48|1|A|G|1365
7P48|1|A|U|1366
7P48|1|A|C|1367

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L17

Chain Q

50S ribosomal protein L22