HL_7P48_065

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7P48|1|A|G|2778, 7P48|1|A|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7P48_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1095

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7P48|1|A|C|2772
7P48|1|A|U|2773
7P48|1|A|G|2774
7P48|1|A|A|2775
7P48|1|A|A|2776
7P48|1|A|A|2777
7P48|1|A|G|2778
7P48|1|A|C|2779
7P48|1|A|A|2780
7P48|1|A|U|2781
7P48|1|A|C|2782
7P48|1|A|U|2783
7P48|1|A|A|2784
7P48|1|A|A|2785
7P48|1|A|G|2786

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain H

50S ribosomal protein L13