HL_7P48_078

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7P48_078 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1414

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7P48|1|a|A|328
7P48|1|a|A|329
7P48|1|a|C|330
7P48|1|a|U|331
7P48|1|a|G|332
7P48|1|a|A|333
7P48|1|a|G|334
7P48|1|a|A|335
7P48|1|a|C|336
7P48|1|a|A|337
7P48|1|a|C|338
7P48|1|a|G|339
7P48|1|a|G|340
7P48|1|a|U|341

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20