HL_7P48_091

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

7P48|1|a|G|980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7P48_091 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.2176

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7P48|1|a|G|972
7P48|1|a|A|973
7P48|1|a|A|974
7P48|1|a|G|975
7P48|1|a|C|976
7P48|1|a|A|977
7P48|1|a|A|978
7P48|1|a|C|979
7P48|1|a|G|980
7P48|1|a|C|981

Current chains

Chain a

16S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10