HL_7P7U_040

3D structure

PDB id

7P7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome with P-tRNA, state IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

7P7U|1|A|A|1658, 7P7U|1|A|A|1660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7P7U_040 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.0719

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

7P7U|1|A|C|1654
7P7U|1|A|G|1655
7P7U|1|A|A|1656
7P7U|1|A|C|1657
7P7U|1|A|A|1658
7P7U|1|A|C|1659
7P7U|1|A|A|1660
7P7U|1|A|G|1661

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain V

50S ribosomal protein L22