7P7U Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7P7U_106 | 1/A/59:68 | Pseudoknot with intercalation | homologous HL_7A0S_001 HL_17803.2 | |
| HL_7P7U_001 | 1/A/67:74 | No text annotation | geometric HL_4WF9_001 HL_08550.2 | |
| HL_7P7U_002 | 1/A/87:95 | Pseudoknot geometry | homologous HL_4WF9_002 HL_00911.3 | |
| HL_7P7U_003 | 1/A/122:127 | No text annotation | homologous HL_4WF9_003 HL_75660.9 | |
| HL_7P7U_004 | 1/A/136:143 | GNRA with tandem sheared | homologous HL_4WF9_004 HL_98423.4 | |
| HL_7P7U_005 | 1/A/159:169 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_7P7U_006 | 1/A/196:203 | No text annotation | geometric HL_4WF9_006 HL_48677.2 | |
| HL_7P7U_007 | 1/A/227:232 | No text annotation | homologous HL_4WF9_007 HL_91813.1 | |
| HL_7P7U_008 | 1/A/248:254 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_7P7U_009 | 1/A/341:348 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_142 NA | |
| HL_7P7U_010 | 1/A/355:359 | No text annotation | homologous HL_4WF9_011 HL_75660.9 | |
| HL_7P7U_011 | 1/A/363:371 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_7P7U_012 | 1/A/421:431 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_7P7U_013 | 1/A/449:456 | Pseudoknot geometry | homologous HL_5J7L_146 NA | |
| HL_7P7U_014 | 1/A/501:506 | GNRA | homologous HL_7RQB_015 NA | |
| HL_7P7U_015 | 1/A/526:531 | GNRA | homologous HL_4WF9_016 HL_34789.5 | |
| HL_7P7U_016 | 1/A/580:587 | No text annotation | homologous HL_4WF9_017 HL_50318.1 | |
| HL_7P7U_017 | 1/A/602:611 | T-loop with 2 stacked bulged bases | geometric HL_4WF9_018 HL_33597.4 | |
| HL_7P7U_018 | 1/A/648:654 | GNRA | geometric HL_5J7L_148 NA | |
| HL_7P7U_019 | 1/A/667:672 | GNRA | homologous HL_7RQB_020 NA | |
| HL_7P7U_020 | 1/A/679:685 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_7P7U_021 | 1/A/751:758 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_7P7U_022 | 1/A/783:792 | No text annotation | homologous HL_7A0S_022 HL_50204.2 | |
| HL_7P7U_023 | 1/A/818:824 | No text annotation | homologous HL_5J7L_156 NA | |
| HL_7P7U_024 | 1/A/865:870 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_7P7U_026 | 1/A/994:1001 | GNRA | homologous HL_7RQB_027 NA | |
| HL_7P7U_027 | 1/A/1017:1024 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_7P7U_030 | 1/A/1210:1215 | UNCG variation | geometric HL_1P6V_001 NA | |
| HL_7P7U_031 | 1/A/1258:1263 | GNRA | homologous HL_4WF9_031 HL_34789.5 | |
| HL_7P7U_032 | 1/A/1316:1324 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_33597.4 | |
| HL_7P7U_033 | 1/A/1359:1365 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_7P7U_034 | 1/A/1398:1403 | GNRA | homologous HL_5J7L_167 NA | |
| HL_7P7U_035 | 1/A/1424:1433 | No text annotation | homologous HL_4WF9_035 HL_77449.2 | |
| HL_7P7U_036 | 1/A/1492:1503 | No text annotation | ||
| HL_7P7U_037 | 1/A/1533:1539 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_7P7U_039 | 1/A/1610:1613 | Mini UNCG | homologous HL_7A0S_039 HL_90436.4 | |
| HL_7P7U_040 | 1/A/1654:1661 | No text annotation | homologous HL_7A0S_040 HL_28592.3 | |
| HL_7P7U_041 | 1/A/1672:1678 | GNRA | homologous HL_5J7L_174 NA | |
| HL_7P7U_042 | 1/A/1733:1738 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_7P7U_043 | 1/A/1753:1760 | No text annotation | geometric HL_6CF2_001 HL_46211.1 | |
| HL_7P7U_044 | 1/A/1765:1769 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_7P7U_045 | 1/A/1790:1800 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_7P7U_046 | 1/A/1819:1824 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_7P7U_047 | 1/A/1881:1886 | No text annotation | geometric HL_5U3G_001 HL_75660.9 | |
| HL_7P7U_048 | 1/A/1923:1933 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_7P7U_049 | 1/A/1962:1970 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_7P7U_050 | 1/A/2040:2049 | No text annotation | homologous HL_4WF9_047 HL_78372.2 | |
| HL_7P7U_052 | 1/A/2222:2228 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_7P7U_053 | 1/A/2261:2269 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_7P7U_054 | 1/A/2277:2289 | No text annotation | homologous HL_4WF9_050 HL_02042.2 | |
| HL_7P7U_107 | 1/A/2317:2325 | No text annotation | homologous HL_5J7L_219 NA | |
| HL_7P7U_056 | 1/A/2337:2344 | Pseudoknot geometry | homologous HL_4WF9_052 HL_52651.3 | |
| HL_7P7U_057 | 1/A/2368:2375 | GNRA with extra cWW | homologous HL_4WF9_053 HL_87268.3 | |
| HL_7P7U_058 | 1/A/2387:2392 | GNRA | homologous HL_7RQB_058 NA | |
| HL_7P7U_059 | 1/A/2417:2426 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_7P7U_060 | 1/A/2484:2492 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_7P7U_061 | 1/A/2541:2548 | GNRA variation | homologous HL_4WF9_057 HL_46665.3 | |
| HL_7P7U_062 | 1/A/2564:2570 | LSU A loop | homologous HL_7A0S_061 HL_48677.2 | |
| HL_7P7U_063 | 1/A/2607:2612 | GNRA | homologous HL_7A0S_062 HL_34789.5 | |
| HL_7P7U_064 | 1/A/2671:2676 | GNRA | homologous HL_7RQB_064 NA | |
| HL_7P7U_065 | 1/A/2714:2719 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_12125.3 | |
| HL_7P7U_066 | 1/A/2758:2772 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_7P7U_067 | 1/A/2807:2813 | UNCG variation | homologous HL_5J7L_200 NA | |
| HL_7P7U_068 | 1/A/2829:2837 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_7P7U_069 | 1/A/2866:2871 | GNRA | homologous HL_7A0S_068 HL_34789.5 | |
| HL_7P7U_108 | 1/B/32:46 | No text annotation | homologous HL_9DFE_067 HL_97756.4 | |
| HL_7P7U_070 | 1/B/36:42 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_7P7U_071 | 1/B/84:88 | Mini UNCG | homologous HL_5J7L_204 NA | |
| HL_7P7U_072 | 1/D/13:23 | tRNA D-loop | homologous HL_1QF6_001 HL_20490.1 | |
| HL_7P7U_073 | 1/D/32:40 | tRNA anticodon loop | homologous HL_6UFG_007 HL_81376.3 | |
| HL_7P7U_074 | 1/D/54:62 | T-loop with 2 stacked bulged bases | homologous HL_5AH5_008 HL_33597.4 | |
| HL_7P7U_075 | 1/a/14:24 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_7P7U_077 | 1/a/175:180 | GNRA | homologous HL_4LFB_003 HL_34789.5 | |
| HL_7P7U_078 | 1/a/210:215 | No text annotation | ||
| HL_7P7U_079 | 1/a/285:293 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_7P7U_080 | 1/a/322:327 | GNRA | homologous HL_5J7L_007 NA | |
| HL_7P7U_081 | 1/a/346:359 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_7P7U_082 | 1/a/368:373 | UNCG | homologous HL_5J7L_009 NA | |
| HL_7P7U_083 | 1/a/405:410 | GNRA | homologous HL_4LFB_010 HL_34789.5 | |
| HL_7P7U_084 | 1/a/445:450 | UNCG | homologous HL_4LFB_011 HL_61337.5 | |
| HL_7P7U_085 | 1/a/488:497 | No text annotation | geometric HL_4TUE_223 HL_38491.3 | |
| HL_7P7U_086 | 1/a/548:553 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_7P7U_087 | 1/a/643:649 | GNRA-like with tWH | homologous HL_5J7L_014 NA | |
| HL_7P7U_088 | 1/a/715:724 | No text annotation | homologous HL_4LFB_015 HL_38491.3 | |
| HL_7P7U_089 | 1/a/752:757 | GNRA | homologous HL_5J7L_016 NA | |
| HL_7P7U_090 | 1/a/812:822 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_7P7U_092 | 1/a/889:894 | GNRA | homologous HL_4LFB_019 HL_34789.5 | |
| HL_7P7U_093 | 1/a/924:929 | GNRA | homologous HL_4LFB_020 HL_34789.5 | |
| HL_7P7U_094 | 1/a/990:999 | No text annotation | homologous HL_4LFB_021 HL_97521.2 | |
| HL_7P7U_095 | 1/a/1039:1044 | GNRA | homologous HL_4LFB_022 HL_34789.5 | |
| HL_7P7U_097 | 1/a/1103:1108 | GNRA | homologous HL_5J7L_023 NA | |
| HL_7P7U_098 | 1/a/1116:1123 | T-loop related | homologous HL_4LFB_025 HL_63894.3 | |
| HL_7P7U_099 | 1/a/1160:1167 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_7P7U_100 | 1/a/1191:1197 | GNRA | homologous HL_4LFB_027 HL_34789.5 | |
| HL_7P7U_101 | 1/a/1291:1296 | GNRA | homologous HL_4LFB_028 HL_34789.5 | |
| HL_7P7U_102 | 1/a/1340:1349 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_7P7U_103 | 1/a/1382:1392 | No text annotation | homologous HL_4LFB_030 HL_86432.2 | |
| HL_7P7U_104 | 1/a/1475:1481 | No text annotation | geometric HL_8C3A_018 NA | |
| HL_7P7U_105 | 1/a/1542:1547 | GNRA | homologous HL_6CZR_103 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7P7U_025 | Mini UNCG | ||
| HL_7P7U_028 | No text annotation | ||
| HL_7P7U_029 | GNRA with tandem sheared | ||
| HL_7P7U_038 | No text annotation | ||
| HL_7P7U_051 | Externally structured | ||
| HL_7P7U_055 | No text annotation | ||
| HL_7P7U_076 | No text annotation | ||
| HL_7P7U_091 | GNRA | ||
| HL_7P7U_096 | Mini UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7P7U_001 | 1/A/24:30, 1/A/548:554 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_22311.2 | |
| IL_7P7U_002 | 1/A/36:37, 1/A/481:483 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_7P7U_003 | 1/A/43:44, 1/A/473:475 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_7P7U_004 | 1/A/81:85, 1/A/97:104 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_7P7U_005 | 1/A/152:155, 1/A/173:176 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_7P7U_006 | 1/A/185:186, 1/A/214:216 | Single stack bend | homologous IL_4WF9_007 IL_15011.4 | |
| IL_7P7U_007 | 1/A/189:196, 1/A/203:211 | 9x8 Sarcin-Ricin; G-bulge | homologous IL_4WF9_008 IL_93502.2 | |
| IL_7P7U_008 | 1/A/240:247, 1/A/255:261 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_009 IL_62167.4 | |
| IL_7P7U_009 | 1/A/304:305, 1/A/402:405 | Major groove minor groove platform; mini C-loop | geometric IL_4LFB_025 IL_73108.3 | |
| IL_7P7U_010 | 1/A/308:314, 1/A/396:399 | No text annotation | ||
| IL_7P7U_011 | 1/A/316:318, 1/A/393:394 | Single bulged A | geometric IL_1JZV_002 IL_14190.3 | |
| IL_7P7U_012 | 1/A/319:321, 1/A/391:392 | Single bulged C | geometric IL_1S03_006 IL_05642.4 | |
| IL_7P7U_013 | 1/A/329:331, 1/A/379:383 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_7P7U_014 | 1/A/339:341, 1/A/348:350 | Isolated non-canonical cWW pair | geometric IL_2O3V_004 IL_71625.4 | |
| IL_7P7U_015 | 1/A/520:523, 1/A/534:547 | No text annotation | homologous IL_4WF9_015 IL_44923.2 | |
| IL_7P7U_016 | 1/A/574:577, 1/A/590:593 | Double sheared | homologous IL_4WF9_016 IL_58355.3 | |
| IL_7P7U_017 | 1/A/600:602, 1/A/611:613 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_71625.4 | |
| IL_7P7U_018 | 1/A/642:646, 1/A/656:660 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_7P7U_019 | 1/A/711:713, 1/A/845:847 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_7P7U_020 | 1/A/713:717, 1/A/838:845 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_7P7U_021 | 1/A/719:721, 1/A/834:836 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_01003.5 | |
| IL_7P7U_022 | 1/A/736:737, 1/A/802:804 | Single bulged A | homologous IL_5J7L_261 NA | |
| IL_7P7U_023 | 1/A/741:742, 1/A/767:769 | Single bulged G | geometric IL_5J7L_262 NA | |
| IL_7P7U_024 | 1/A/742:746, 1/A/763:767 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_7P7U_025 | 1/A/777:779, 1/A/796:797 | Major groove platform | homologous IL_5J7L_264 NA | |
| IL_7P7U_026 | 1/A/814:816, 1/A/826:830 | Multiple bulged bases | homologous IL_5J7L_265 NA | |
| IL_7P7U_027 | 1/A/876:877, 1/A/979:981 | Single stack bend | homologous IL_7A0S_022 IL_15011.4 | |
| IL_7P7U_028 | 1/A/882:887, 1/A/972:974 | No text annotation | ||
| IL_7P7U_180 | 1/A/882:888, 1/A/970:974 | No text annotation | ||
| IL_7P7U_029 | 1/A/887:888, 1/A/970:972 | 90 degree turn | geometric IL_7A0S_024 IL_79144.1 | |
| IL_7P7U_030 | 1/A/892:893, 1/A/964:966 | Single bulged U | homologous IL_4WF9_030 IL_97561.6 | |
| IL_7P7U_031 | 1/A/896:902, 1/A/955:961 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_4WF9_031 IL_94128.2 | |
| IL_7P7U_032 | 1/A/902:903, 1/A/953:955 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_7P7U_033 | 1/A/904:908, 1/A/949:952 | C-loop | homologous IL_7RQB_029 NA | |
| IL_7P7U_035 | 1/A/915:919, 1/A/938:942 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 NA | |
| IL_7P7U_037 | 1/A/991:993, 1/A/1002:1004 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_7P7U_038 | 1/A/1033:1035, 1/A/1198:1199 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_7P7U_039 | 1/A/1037:1041, 1/A/1192:1196 | UAA/GAN | homologous IL_5J7L_277 NA | |
| IL_7P7U_040 | 1/A/1043:1050, 1/A/1189:1190 | SSU/LSU pseudoknot | homologous IL_5J7L_278 NA | |
| IL_7P7U_041 | 1/A/1050:1052, 1/A/1188:1189 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_7P7U_042 | 1/A/1057:1063, 1/A/1179:1183 | Kink-turn related | homologous IL_4WF9_039 IL_57188.6 | |
| IL_7P7U_043 | 1/A/1063:1069, 1/A/1163:1179 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_7P7U_044 | 1/A/1070:1073, 1/A/1160:1162 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_7P7U_045 | 1/A/1082:1091, 1/A/1146:1151 | No text annotation | ||
| IL_7P7U_048 | 1/A/1233:1235, 1/A/1283:1286 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.6 | |
| IL_7P7U_049 | 1/A/1241:1243, 1/A/1275:1277 | Isolated cWH basepair | homologous IL_4WF9_045 IL_10892.3 | |
| IL_7P7U_050 | 1/A/1244:1251, 1/A/1270:1274 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_7P7U_051 | 1/A/1255:1257, 1/A/1264:1266 | Intercalated cWW | homologous IL_4WF9_047 IL_53541.1 | |
| IL_7P7U_052 | 1/A/1298:1305, 1/A/2024:2030 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_048 IL_62167.4 | |
| IL_7P7U_053 | 1/A/1345:1348, 1/A/1645:1646 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_7P7U_054 | 1/A/1354:1358, 1/A/1366:1368 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_06671.2 | |
| IL_7P7U_055 | 1/A/1386:1390, 1/A/1411:1415 | UAA/GAN | homologous IL_7A0S_048 IL_89021.4 | |
| IL_7P7U_056 | 1/A/1392:1396, 1/A/1405:1409 | tSH-tWH-tHS | homologous IL_5J7L_293 NA | |
| IL_7P7U_057 | 1/A/1450:1457, 1/A/1626:1629 | No text annotation | ||
| IL_7P7U_058 | 1/A/1458:1462, 1/A/1622:1625 | Other IL | homologous IL_4WF9_054 IL_74317.1 | |
| IL_7P7U_059 | 1/A/1473:1476, 1/A/1602:1606 | No text annotation | ||
| IL_7P7U_060 | 1/A/1478:1481, 1/A/1596:1600 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_7P7U_061 | 1/A/1510:1513, 1/A/1563:1567 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_7P7U_062 | 1/A/1517:1520, 1/A/1556:1559 | Double sheared | geometric IL_4LFB_060 IL_58355.3 | |
| IL_7P7U_063 | 1/A/1523:1525, 1/A/1547:1553 | No text annotation | ||
| IL_7P7U_064 | 1/A/1693:1698, 1/A/2017:2019 | No text annotation | homologous IL_4WF9_062 IL_12566.5 | |
| IL_7P7U_065 | 1/A/1705:1707, 1/A/2008:2010 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.2 | |
| IL_7P7U_066 | 1/A/1708:1711, 1/A/2006:2007 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_7P7U_181 | 1/A/1708:1716, 1/A/2003:2007 | No text annotation | homologous IL_5J7L_386 NA | |
| IL_7P7U_067 | 1/A/1711:1716, 1/A/2003:2006 | Intercalated tWH | geometric IL_5J7L_307 NA | |
| IL_7P7U_068 | 1/A/1728:1733, 1/A/1738:1744 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_7P7U_069 | 1/A/1783:1784, 1/A/1993:1995 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_7P7U_070 | 1/A/1811:1817, 1/A/1826:1834 | Kink-turn related | homologous IL_7A0S_065 IL_17069.6 | |
| IL_7P7U_071 | 1/A/1850:1853, 1/A/1915:1916 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_7P7U_072 | 1/A/1854:1855, 1/A/1911:1914 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_7P7U_073 | 1/A/1859:1862, 1/A/1906:1907 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_7P7U_074 | 1/A/1864:1868, 1/A/1900:1904 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_7P7U_075 | 1/A/1869:1873, 1/A/1895:1899 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_7P7U_076 | 1/A/1877:1880, 1/A/1887:1891 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_7P7U_077 | 1/A/1946:1947, 1/A/1977:1980 | Bulged stacked bases | homologous IL_5J7L_318 NA | |
| IL_7P7U_078 | 1/A/1947:1958, 1/A/1974:1977 | No text annotation | geometric IL_4WF9_077 IL_84014.2 | |
| IL_7P7U_079 | 1/A/2063:2065, 1/A/2630:2631 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_7P7U_080 | 1/A/2067:2069, 1/A/2625:2628 | No text annotation | homologous IL_4WF9_079 IL_80025.2 | |
| IL_7P7U_081 | 1/A/2080:2082, 1/A/2455:2456 | Single bulged U | homologous IL_7A0S_075 IL_97561.6 | |
| IL_7P7U_082 | 1/A/2083:2084, 1/A/2451:2454 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_7P7U_083 | 1/A/2094:2096, 1/A/2249:2252 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_7P7U_084 | 1/A/2108:2110, 1/A/2205:2207 | Isolated non-canonical cWW pair | geometric IL_5ZTM_002 IL_71625.4 | |
| IL_7P7U_085 | 1/A/2116:2118, 1/A/2197:2199 | Isolated non-canonical cWW pair | geometric IL_4E48_003 IL_01003.5 | |
| IL_7P7U_086 | 1/A/2215:2217, 1/A/2233:2234 | Single bulged G | geometric IL_4LFB_036 IL_28408.3 | |
| IL_7P7U_087 | 1/A/2310:2312, 1/A/2330:2334 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_7P7U_088 | 1/A/2363:2366, 1/A/2377:2380 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_7P7U_089 | 1/A/2414:2416, 1/A/2427:2428 | Single bulged U | homologous IL_5J7L_334 NA | |
| IL_7P7U_090 | 1/A/2466:2467, 1/A/2511:2513 | Single stack bend | geometric IL_4WF9_089 IL_15011.4 | |
| IL_7P7U_091 | 1/A/2467:2468, 1/A/2509:2511 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_7P7U_092 | 1/A/2470:2472, 1/A/2506:2507 | Major groove platform | geometric IL_4WF9_091 IL_48076.9 | |
| IL_7P7U_093 | 1/A/2472:2474, 1/A/2502:2506 | Major groove minor groove platform with extra cWW | homologous IL_4WF9_092 IL_36931.3 | |
| IL_7P7U_094 | 1/A/2479:2483, 1/A/2493:2497 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_7P7U_095 | 1/A/2520:2521, 1/A/2593:2595 | Major groove platform | homologous IL_7A0S_088 IL_46637.3 | |
| IL_7P7U_096 | 1/A/2523:2525, 1/A/2587:2591 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 NA | |
| IL_7P7U_097 | 1/A/2525:2526, 1/A/2584:2587 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_7P7U_098 | 1/A/2535:2536, 1/A/2553:2556 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_7P7U_099 | 1/A/2604:2605, 1/A/2614:2616 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_7P7U_100 | 1/A/2649:2653, 1/A/2787:2795 | tSH-tHS-tHW | homologous IL_7A0S_093 IL_04638.4 | |
| IL_7P7U_101 | 1/A/2665:2671, 1/A/2676:2681 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.6 | |
| IL_7P7U_102 | 1/A/2693:2697, 1/A/2738:2740 | C-loop | homologous IL_5J7L_347 NA | |
| IL_7P7U_103 | 1/A/2700:2704, 1/A/2731:2735 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_7P7U_104 | 1/A/2708:2709, 1/A/2724:2727 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_7P7U_105 | 1/A/2750:2755, 1/A/2775:2780 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_7P7U_106 | 1/A/2848:2849, 1/A/2888:2890 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_7P7U_107 | 1/A/2853:2856, 1/A/2880:2884 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_7P7U_108 | 1/A/2857:2862, 1/A/2875:2879 | tHS double platform | homologous IL_4WF9_108 IL_48489.2 | |
| IL_7P7U_109 | 1/B/15:16, 1/B/63:65 | Major groove intercalation | homologous IL_5J7L_355 NA | |
| IL_7P7U_110 | 1/B/21:27, 1/B/53:58 | No text annotation | geometric IL_9E6Q_106 IL_41504.1 | |
| IL_7P7U_111 | 1/B/28:29, 1/B/49:52 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_7P7U_112 | 1/B/32:36, 1/B/42:46 | Symmetric double minor groove platform | geometric IL_4V9F_104 IL_58103.13 | |
| IL_7P7U_113 | 1/B/69:77, 1/B/95:103 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_7P7U_115 | 1/a/32:34, 1/a/578:579 | Single bulged G | homologous IL_5J7L_001 NA | |
| IL_7P7U_116 | 1/a/46:47, 1/a/422:424 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_7P7U_117 | 1/a/49:54, 1/a/385:387 | No text annotation | geometric IL_5J7L_003 NA | |
| IL_7P7U_118 | 1/a/56:58, 1/a/382:383 | Minor groove platform | homologous IL_5J7L_004 NA | |
| IL_7P7U_119 | 1/a/65:68, 1/a/119:120 | Multiple bulged bases | geometric IL_5J7L_005 NA | |
| IL_7P7U_182 | 1/a/65:71, 1/a/116:120 | No text annotation | ||
| IL_7P7U_120 | 1/a/68:71, 1/a/116:119 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_15225.3 | |
| IL_7P7U_121 | 1/a/145:148, 1/a/257:258 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.2 | |
| IL_7P7U_122 | 1/a/149:153, 1/a/253:256 | No text annotation | homologous IL_4LFB_008 IL_60988.3 | |
| IL_7P7U_123 | 1/a/161:163, 1/a/193:195 | Isolated cWH basepair | homologous IL_5J7L_011 NA | |
| IL_7P7U_124 | 1/a/164:170, 1/a/185:192 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_7P7U_125 | 1/a/268:273, 1/a/303:310 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.5 | |
| IL_7P7U_126 | 1/a/275:278, 1/a/300:301 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_7P7U_127 | 1/a/318:319, 1/a/330:334 | C-loop | homologous IL_5J7L_016 NA | |
| IL_7P7U_128 | 1/a/393:395, 1/a/418:419 | Single bulged U | homologous IL_4LFB_014 IL_97561.6 | |
| IL_7P7U_129 | 1/a/397:401, 1/a/415:416 | C-loop | homologous IL_5J7L_018 NA | |
| IL_7P7U_130 | 1/a/401:402, 1/a/413:415 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_7P7U_131 | 1/a/435:442, 1/a/453:459 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_7P7U_132 | 1/a/472:476, 1/a/509:514 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_82100.1 | |
| IL_7P7U_133 | 1/a/476:482, 1/a/503:509 | No text annotation | ||
| IL_7P7U_134 | 1/a/530:537, 1/a/566:567 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_7P7U_135 | 1/a/541:547, 1/a/554:562 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_7P7U_136 | 1/a/595:601, 1/a/907:908 | No text annotation | homologous IL_5J7L_026 NA | |
| IL_7P7U_137 | 1/a/606:610, 1/a/783:787 | tSH-tWH-tHS | homologous IL_5J7L_027 NA | |
| IL_7P7U_138 | 1/a/620:622, 1/a/670:671 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_7P7U_139 | 1/a/623:624, 1/a/666:669 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_7P7U_140 | 1/a/630:631, 1/a/658:660 | Single bulged U | geometric IL_4LFB_014 IL_97561.6 | |
| IL_7P7U_141 | 1/a/631:638, 1/a/654:658 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_7P7U_142 | 1/a/680:681, 1/a/777:780 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.3 | |
| IL_7P7U_143 | 1/a/683:684, 1/a/773:775 | Major groove platform | homologous IL_4LFB_028 IL_48076.9 | |
| IL_7P7U_144 | 1/a/688:692, 1/a/766:769 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_7P7U_183 | 1/a/699:703, 1/a/739:743 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.4 | |
| IL_7P7U_146 | 1/a/710:714, 1/a/725:732 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_7P7U_147 | 1/a/800:804, 1/a/830:831 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_7P7U_148 | 1/a/805:809, 1/a/825:829 | tSH-tWH-tHS | homologous IL_5J7L_037 NA | |
| IL_7P7U_149 | 1/a/914:921, 1/a/932:937 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.2 | |
| IL_7P7U_150 | 1/a/949:950, 1/a/1419:1421 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_7P7U_151 | 1/a/952:954, 1/a/1416:1417 | Single bulged G | homologous IL_5J7L_040 NA | |
| IL_7P7U_152 | 1/a/960:962, 1/a/1406:1410 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_7P7U_153 | 1/a/980:981, 1/a/1252:1254 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_7P7U_154 | 1/a/1020:1024, 1/a/1071:1072 | Minor groove platform | homologous IL_5J7L_043 NA | |
| IL_7P7U_155 | 1/a/1025:1026, 1/a/1068:1070 | Single stack bend | homologous IL_5J7L_044 NA | |
| IL_7P7U_156 | 1/a/1026:1030, 1/a/1064:1068 | No text annotation | ||
| IL_7P7U_157 | 1/a/1075:1077, 1/a/1234:1235 | Single bulged U | homologous IL_5J7L_046 NA | |
| IL_7P7U_158 | 1/a/1079:1083, 1/a/1230:1232 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.2 | |
| IL_7P7U_159 | 1/a/1084:1085, 1/a/1225:1229 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_7P7U_160 | 1/a/1087:1088, 1/a/1221:1223 | Single bulged A | geometric IL_5J7L_049 NA | |
| IL_7P7U_161 | 1/a/1088:1090, 1/a/1219:1221 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_7P7U_162 | 1/a/1151:1154, 1/a/1171:1175 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_7P7U_163 | 1/a/1156:1159, 1/a/1168:1169 | Minor groove platform | homologous IL_5J7L_052 NA | |
| IL_7P7U_164 | 1/a/1184:1187, 1/a/1201:1207 | No text annotation | geometric IL_5J7L_053 NA | |
| IL_7P7U_165 | 1/a/1273:1279, 1/a/1310:1316 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_7P7U_166 | 1/a/1281:1284, 1/a/1303:1308 | 180 degree turn | homologous IL_5J7L_055 NA | |
| IL_7P7U_167 | 1/a/1285:1288, 1/a/1299:1302 | Tandem non-canonical cWW pairs | geometric IL_4V88_461 NA | |
| IL_7P7U_168 | 1/a/1329:1334, 1/a/1355:1360 | No text annotation | geometric IL_4LFB_055 IL_57885.3 | |
| IL_7P7U_169 | 1/a/1425:1427, 1/a/1528:1531 | No text annotation | homologous IL_5J7L_058 NA | |
| IL_7P7U_170 | 1/a/1427:1430, 1/a/1524:1528 | No text annotation | geometric IL_4V88_464 NA | |
| IL_7P7U_171 | 1/a/1431:1433, 1/a/1521:1523 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_01003.5 | |
| IL_7P7U_172 | 1/a/1433:1435, 1/a/1518:1521 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_7P7U_173 | 1/a/1438:1440, 1/a/1513:1515 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_7P7U_174 | 1/a/1442:1445, 1/a/1508:1511 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_7P7U_175 | 1/a/1450:1453, 1/a/1500:1503 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_7P7U_176 | 1/a/1456:1461, 1/a/1493:1497 | Triple sheared related | homologous IL_5J7L_063 NA | |
| IL_7P7U_177 | 1/a/1461:1463, 1/a/1491:1493 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_01003.5 | |
| IL_7P7U_178 | 1/a/1466:1469, 1/a/1486:1488 | Isolated tHS basepair with bulges | geometric IL_7RQB_012 NA | |
| IL_7P7U_179 | 1/a/1471:1474, 1/a/1482:1484 | No text annotation | homologous IL_5J7L_065 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7P7U_034 | Isolated cWS basepair | ||
| IL_7P7U_036 | Isolated non-canonical cWW pair | ||
| IL_7P7U_046 | No text annotation | ||
| IL_7P7U_047 | Major groove platform with extra cWW | ||
| IL_7P7U_114 | No text annotation | ||
| IL_7P7U_145 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7P7U_001 | 1/A/30:31, 1/A/513:520, 1/A/547:548 | No text annotation | homologous J3_5J7L_036 NA | |
| J3_7P7U_029 | 1/A/30:31, 1/A/513:523, 1/A/534:548 | No text annotation | homologous J3_9DFE_002 J3_17917.2 | |
| J3_7P7U_030 | 1/A/32:35, 1/A/484:500, 1/A/507:512 | No text annotation | homologous J3_9DFE_003 J3_07616.2 | |
| J3_7P7U_031 | 1/A/56:57, 1/A/70:76, 1/A/109:113 | No text annotation | homologous J3_9DFE_004 J3_01004.2 | |
| J3_7P7U_002 | 1/A/56:67, 1/A/74:76, 1/A/109:113 | No text annotation | geometric J3_4WF9_001 J3_47707.1 | |
| J3_7P7U_003 | 1/A/271:275, 1/A/294:301, 1/A/408:409 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_7P7U_032 | 1/A/333:337, 1/A/352:361, 1/A/373:377 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_7P7U_004 | 1/A/722:728, 1/A/812:814, 1/A/830:833 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_7P7U_005 | 1/A/737:739, 1/A/771:775, 1/A/799:802 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_7P7U_007 | 1/A/1333:1338, 1/A/1667:1669, 1/A/1681:1684 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_7P7U_033 | 1/A/1341:1344, 1/A/1647:1653, 1/A/1662:1664 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_7P7U_009 | 1/A/1379:1385, 1/A/1416:1420, 1/A/1437:1438 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_7P7U_034 | 1/A/1465:1470, 1/A/1609:1610, 1/A/1613:1619 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_7P7U_010 | 1/A/2104:2106, 1/A/2209:2214, 1/A/2235:2241 | No text annotation | homologous J3_4WF9_007 J3_07703.1 | |
| J3_7P7U_035 | 1/A/2295:2297, 1/A/2397:2408, 1/A/2434:2440 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_7P7U_011 | 1/A/2308:2310, 1/A/2334:2336, 1/A/2345:2350 | No text annotation | homologous J3_4WF9_008 J3_05327.2 | |
| J3_7P7U_012 | 1/A/2530:2533, 1/A/2558:2560, 1/A/2574:2580 | No text annotation | homologous J3_4WF9_009 J3_32601.6 | |
| J3_7P7U_013 | 1/A/2802:2804, 1/A/2816:2821, 1/A/2899:2903 | No text annotation | homologous J3_7A0S_012 J3_20574.1 | |
| J3_7P7U_014 | 1/A/2824:2825, 1/A/2841:2846, 1/A/2892:2896 | No text annotation | homologous J3_7A0S_013 J3_76911.2 | |
| J3_7P7U_015 | 1/B/9:14, 1/B/66:68, 1/B/104:107 | No text annotation | ||
| J3_7P7U_016 | 1/a/48:49, 1/a/387:393, 1/a/419:421 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_7P7U_036 | 1/a/48:54, 1/a/385:393, 1/a/419:421 | No text annotation | homologous J3_5J7L_050 NA | |
| J3_7P7U_017 | 1/a/612:614, 1/a/677:680, 1/a/780:781 | No text annotation | homologous J3_5J7L_002 NA | |
| J3_7P7U_037 | 1/a/612:614, 1/a/677:681, 1/a/777:781 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_7P7U_018 | 1/a/698:699, 1/a/743:751, 1/a/758:760 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_7P7U_019 | 1/a/852:855, 1/a/884:888, 1/a/895:901 | No text annotation | homologous J3_4LFB_001 J3_02285.1 | |
| J3_7P7U_020 | 1/a/963:966, 1/a/1370:1376, 1/a/1398:1405 | No text annotation | homologous J3_4LFB_002 J3_85722.2 | |
| J3_7P7U_021 | 1/a/970:973, 1/a/1261:1263, 1/a/1363:1366 | No text annotation | homologous J3_4LFB_003 J3_44359.2 | |
| J3_7P7U_022 | 1/a/982:989, 1/a/1000:1011, 1/a/1247:1251 | No text annotation | homologous J3_4LFB_004 J3_88451.2 | |
| J3_7P7U_023 | 1/a/1017:1020, 1/a/1072:1074, 1/a/1236:1241 | No text annotation | homologous J3_5J7L_007 NA | |
| J3_7P7U_038 | 1/a/1017:1024, 1/a/1071:1074, 1/a/1236:1241 | No text annotation | homologous J3_5J7L_053 NA | |
| J3_7P7U_041 | 1/a/1030:1035, 1/a/1048:1052, 1/a/1063:1064 | No text annotation | ||
| J3_7P7U_025 | 1/a/1090:1095, 1/a/1134:1140, 1/a/1213:1219 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_7P7U_039 | 1/a/1100:1101, 1/a/1110:1113, 1/a/1126:1129 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_7P7U_027 | 1/a/1143:1145, 1/a/1181:1184, 1/a/1207:1210 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_7P7U_040 | 1/a/1143:1145, 1/a/1181:1187, 1/a/1201:1210 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_7P7U_028 | 1/a/1263:1267, 1/a/1322:1329, 1/a/1360:1363 | No text annotation | homologous J3_4LFB_009 J3_03192.2 | |
| J4_7P7U_001 | 1/A/270:271, 1/A/409:414, 1/A/438:445, 1/A/460:463 | No text annotation | homologous J4_4WF9_001 J4_94698.2 | |
| J4_7P7U_002 | 1/A/333:337, 1/A/352:355, 1/A/359:361, 1/A/373:377 | No text annotation | homologous J4_5J7L_019 NA | |
| J4_7P7U_003 | 1/A/637:640, 1/A/662:666, 1/A/673:676, 1/A/688:695 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_7P7U_004 | 1/A/1306:1311, 1/A/1329:1330, 1/A/1687:1690, 1/A/2022:2023 | No text annotation | homologous J4_4WF9_004 J4_64571.6 | |
| J4_7P7U_005 | 1/A/1345:1349, 1/A/1373:1378, 1/A/1439:1440, 1/A/1639:1646 | No text annotation | homologous J4_4WF9_005 J4_77353.2 | |
| J4_7P7U_006 | 1/A/1348:1349, 1/A/1373:1378, 1/A/1439:1440, 1/A/1639:1645 | No text annotation | homologous J4_4WF9_006 J4_48150.2 | |
| J4_7P7U_007 | 1/A/1485:1487, 1/A/1508:1509, 1/A/1568:1572, 1/A/1587:1592 | No text annotation | homologous J4_7A0S_007 J4_91813.1 | |
| J4_7P7U_008 | 1/A/1785:1789, 1/A/1801:1805, 1/A/1840:1843, 1/A/1988:1992 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_7P7U_009 | 1/A/1846:1848, 1/A/1918:1919, 1/A/1937:1946, 1/A/1980:1985 | No text annotation | homologous J4_9DFE_008 J4_42306.2 | |
| J4_7P7U_010 | 1/A/2298:2302, 1/A/2356:2360, 1/A/2383:2385, 1/A/2394:2396 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_7P7U_011 | 1/A/2656:2659, 1/A/2687:2689, 1/A/2744:2748, 1/A/2782:2784 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_7P7U_012 | 1/D/7:10, 1/D/26:28, 1/D/44:50, 1/D/66:67 | tRNA junction | homologous J4_9DFC_015 NA | |
| J4_7P7U_013 | 1/a/131:139, 1/a/264:266, 1/a/312:315, 1/a/337:338 | No text annotation | ||
| J4_7P7U_014 | 1/a/159:161, 1/a/195:203, 1/a/222:230, 1/a/245:247 | No text annotation | ||
| J4_7P7U_015 | 1/a/601:603, 1/a/790:795, 1/a/836:847, 1/a/906:907 | No text annotation | homologous J4_5J7L_003 NA | |
| J5_7P7U_001 | 1/A/47:54, 1/A/115:120, 1/A/129:130, 1/A/149:151, 1/A/177:179 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_7P7U_002 | 1/A/270:275, 1/A/294:301, 1/A/408:414, 1/A/438:445, 1/A/460:463 | No text annotation | ||
| J5_7P7U_003 | 1/A/569:571, 1/A/596:600, 1/A/613:615, 1/A/1297:1298, 1/A/2030:2031 | No text annotation | homologous J5_4WF9_003 J5_43153.6 | |
| J5_7P7U_004 | 1/A/620:625, 1/A/707:710, 1/A/848:851, 1/A/1232:1233, 1/A/1286:1292 | No text annotation | homologous J5_4WF9_004 J5_74302.6 | |
| J5_7P7U_005 | 1/A/1716:1724, 1/A/1748:1749, 1/A/1764:1765, 1/A/1769:1777, 1/A/2001:2003 | No text annotation | homologous J5_4WF9_005 J5_99177.2 | |
| J5_7P7U_006 | 1/A/2070:2077, 1/A/2459:2466, 1/A/2513:2520, 1/A/2595:2601, 1/A/2619:2624 | No text annotation | ||
| J5_7P7U_007 | 1/A/2087:2090, 1/A/2256:2259, 1/A/2271:2272, 1/A/2294:2295, 1/A/2440:2448 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J5_7P7U_008 | 1/a/38:41, 1/a/429:432, 1/a/462:467, 1/a/519:526, 1/a/571:574 | No text annotation | ||
| J5_7P7U_009 | 1/a/60:63, 1/a/122:129, 1/a/340:342, 1/a/363:365, 1/a/376:380 | No text annotation | homologous J5_5J7L_003 NA | |
| J6_7P7U_001 | 1/A/45:46, 1/A/180:185, 1/A/216:226, 1/A/233:237, 1/A/264:268, 1/A/465:472 | No text annotation | ||
| J6_7P7U_002 | 1/A/2087:2090, 1/A/2256:2259, 1/A/2271:2272, 1/A/2294:2297, 1/A/2397:2408, 1/A/2434:2448 | No text annotation | ||
| J7_7P7U_001 | 1/A/8:15, 1/A/563:569, 1/A/2031:2036, 1/A/2053:2056, 1/A/2638:2643, 1/A/2801:2802, 1/A/2903:2904 | No text annotation | ||
| J7_7P7U_002 | 1/A/856:861, 1/A/874:875, 1/A/982:985, 1/A/1010:1015, 1/A/1026:1030, 1/A/1202:1203, 1/A/1222:1227 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7P7U_006 | No text annotation | ||
| J3_7P7U_008 | No text annotation | ||
| J3_7P7U_024 | No text annotation | ||
| J3_7P7U_026 | No text annotation |
Coloring options: