HL_7PD3_035

3D structure

PDB id

7PD3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AACUUAACUU

Length

10 nucleotides

Bulged bases

7PD3|1|B|U|1654, 7PD3|1|B|A|1655, 7PD3|1|B|C|1657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PD3_035 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3181

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7PD3|1|B|A|1650
7PD3|1|B|A|1651
7PD3|1|B|C|1652
7PD3|1|B|U|1653
7PD3|1|B|U|1654
7PD3|1|B|A|1655
7PD3|1|B|A|1656
7PD3|1|B|C|1657
7PD3|1|B|U|1658
7PD3|1|B|U|1659

Current chains

Chain B

mt-tRNAVal

Nearby chains

Chain 6

39S ribosomal protein L38, mitochondrial