HL_7PHC_040

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GAACACAC

Length

8 nucleotides

Bulged bases

7PHC|1|3|A|1650, 7PHC|1|3|A|1652

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7PHC_040 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1452

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7PHC|1|3|G|1646
7PHC|1|3|A|1647
7PHC|1|3|A|1648
7PHC|1|3|C|1649
7PHC|1|3|A|1650
7PHC|1|3|C|1651
7PHC|1|3|A|1652
7PHC|1|3|C|1653

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain m

50S ribosomal protein L17

Chain r

50S ribosomal protein L22