7PHC Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7PHC_001 | No text annotation | ||
| HL_7PHC_002 | No text annotation | ||
| HL_7PHC_003 | Mini UNCG | ||
| HL_7PHC_004 | GNRA related | ||
| HL_7PHC_005 | No text annotation | ||
| HL_7PHC_006 | No text annotation | ||
| HL_7PHC_007 | No text annotation | ||
| HL_7PHC_008 | No text annotation | ||
| HL_7PHC_107 | No text annotation | ||
| HL_7PHC_009 | No text annotation | ||
| HL_7PHC_010 | T-loop with 2 stacked bulged bases | ||
| HL_7PHC_011 | No text annotation | ||
| HL_7PHC_108 | No text annotation | ||
| HL_7PHC_012 | No text annotation | ||
| HL_7PHC_013 | Pseudoknot geometry | ||
| HL_7PHC_014 | No text annotation | ||
| HL_7PHC_015 | GNRA | ||
| HL_7PHC_016 | No text annotation | ||
| HL_7PHC_109 | No text annotation | ||
| HL_7PHC_017 | No text annotation | ||
| HL_7PHC_018 | GNRA related | ||
| HL_7PHC_019 | GNRA | ||
| HL_7PHC_020 | GNRA | ||
| HL_7PHC_021 | GNRA with tandem sheared | ||
| HL_7PHC_022 | No text annotation | ||
| HL_7PHC_023 | No text annotation | ||
| HL_7PHC_024 | No text annotation | ||
| HL_7PHC_110 | No text annotation | ||
| HL_7PHC_025 | No text annotation | ||
| HL_7PHC_026 | GNRA | ||
| HL_7PHC_027 | No text annotation | ||
| HL_7PHC_028 | No text annotation | ||
| HL_7PHC_029 | No text annotation | ||
| HL_7PHC_030 | No text annotation | ||
| HL_7PHC_115 | No text annotation | ||
| HL_7PHC_031 | No text annotation | ||
| HL_7PHC_032 | T-loop with 2 stacked bulged bases | ||
| HL_7PHC_033 | Mini UNCG | ||
| HL_7PHC_034 | No text annotation | ||
| HL_7PHC_035 | No text annotation | ||
| HL_7PHC_036 | No text annotation | ||
| HL_7PHC_037 | Pseudoknot geometry with 3' bulge | ||
| HL_7PHC_038 | No text annotation | ||
| HL_7PHC_039 | Mini UNCG | ||
| HL_7PHC_040 | No text annotation | ||
| HL_7PHC_041 | GNRA with extra cWW | ||
| HL_7PHC_111 | GNRA | ||
| HL_7PHC_042 | UNCG | ||
| HL_7PHC_043 | No text annotation | ||
| HL_7PHC_044 | No text annotation | ||
| HL_7PHC_045 | Mini UNCG | ||
| HL_7PHC_046 | No text annotation | ||
| HL_7PHC_047 | GNRA | ||
| HL_7PHC_048 | No text annotation | ||
| HL_7PHC_049 | No text annotation | ||
| HL_7PHC_050 | No text annotation | ||
| HL_7PHC_051 | No text annotation | ||
| HL_7PHC_052 | No text annotation | ||
| HL_7PHC_053 | LSU P loop | ||
| HL_7PHC_054 | No text annotation | ||
| HL_7PHC_055 | No text annotation | ||
| HL_7PHC_056 | GNRA with extra cWW | ||
| HL_7PHC_057 | GNRA | ||
| HL_7PHC_058 | No text annotation | ||
| HL_7PHC_059 | No text annotation | ||
| HL_7PHC_060 | No text annotation | ||
| HL_7PHC_112 | GNRA variation | ||
| HL_7PHC_061 | No text annotation | ||
| HL_7PHC_062 | No text annotation | ||
| HL_7PHC_063 | No text annotation | ||
| HL_7PHC_064 | Ribsomal LSU H95 | ||
| HL_7PHC_113 | No text annotation | ||
| HL_7PHC_065 | No text annotation | ||
| HL_7PHC_114 | No text annotation | ||
| HL_7PHC_066 | No text annotation | ||
| HL_7PHC_067 | GNRA | ||
| HL_7PHC_068 | No text annotation | ||
| HL_7PHC_069 | No text annotation | ||
| HL_7PHC_070 | No text annotation | ||
| HL_7PHC_071 | No text annotation | ||
| HL_7PHC_072 | Externally structured | ||
| HL_7PHC_073 | No text annotation | ||
| HL_7PHC_074 | GNRA | ||
| HL_7PHC_075 | GNRA related | ||
| HL_7PHC_076 | GNRA | ||
| HL_7PHC_077 | No text annotation | ||
| HL_7PHC_078 | UNCG | ||
| HL_7PHC_079 | No text annotation | ||
| HL_7PHC_080 | No text annotation | ||
| HL_7PHC_081 | No text annotation | ||
| HL_7PHC_082 | GNRA | ||
| HL_7PHC_083 | GNRA-like with tWH | ||
| HL_7PHC_084 | No text annotation | ||
| HL_7PHC_085 | GNRA | ||
| HL_7PHC_086 | No text annotation | ||
| HL_7PHC_087 | No text annotation | ||
| HL_7PHC_088 | GNRA | ||
| HL_7PHC_089 | GNRA | ||
| HL_7PHC_090 | No text annotation | ||
| HL_7PHC_091 | No text annotation | ||
| HL_7PHC_092 | GNRA | ||
| HL_7PHC_093 | T-loop related | ||
| HL_7PHC_094 | No text annotation | ||
| HL_7PHC_095 | GNRA | ||
| HL_7PHC_096 | No text annotation | ||
| HL_7PHC_097 | T-loop with 3 stacked bulged bases | ||
| HL_7PHC_098 | No text annotation | ||
| HL_7PHC_099 | No text annotation | ||
| HL_7PHC_100 | GNRA | ||
| HL_7PHC_101 | No text annotation | ||
| HL_7PHC_102 | No text annotation | ||
| HL_7PHC_103 | No text annotation | ||
| HL_7PHC_104 | No text annotation | ||
| HL_7PHC_105 | No text annotation | ||
| HL_7PHC_106 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7PHC_001 | Single base bend | ||
| IL_7PHC_002 | Tandem non-canonical cWW pairs | ||
| IL_7PHC_003 | No text annotation | ||
| IL_7PHC_004 | Minor groove platform | ||
| IL_7PHC_005 | Kink-turn | ||
| IL_7PHC_006 | Isolated non-canonical cWW pair | ||
| IL_7PHC_180 | Single stack bend | ||
| IL_7PHC_007 | No text annotation | ||
| IL_7PHC_008 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7PHC_009 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_7PHC_010 | Major groove platform with intercalation | ||
| IL_7PHC_011 | No text annotation | ||
| IL_7PHC_181 | No text annotation | ||
| IL_7PHC_012 | No text annotation | ||
| IL_7PHC_013 | Single stack bend | ||
| IL_7PHC_014 | Single stack bend | ||
| IL_7PHC_182 | No text annotation | ||
| IL_7PHC_015 | No text annotation | ||
| IL_7PHC_016 | Minor groove platform | ||
| IL_7PHC_017 | No text annotation | ||
| IL_7PHC_018 | Double sheared | ||
| IL_7PHC_019 | No text annotation | ||
| IL_7PHC_183 | No text annotation | ||
| IL_7PHC_020 | Single stack bend | ||
| IL_7PHC_184 | Tandem non-canonical cWW pairs | ||
| IL_7PHC_224 | Isolated non-canonical cWW pair | ||
| IL_7PHC_021 | Single stack bend | ||
| IL_7PHC_022 | tHW-tHW cross-strand stack | ||
| IL_7PHC_023 | Single bulged A | ||
| IL_7PHC_024 | Isolated non-canonical cWW pair | ||
| IL_7PHC_025 | Triple sheared | ||
| IL_7PHC_026 | Major groove platform | ||
| IL_7PHC_027 | Isolated non-canonical cWW pair | ||
| IL_7PHC_028 | Multiple bulged bases | ||
| IL_7PHC_029 | No text annotation | ||
| IL_7PHC_225 | No text annotation | ||
| IL_7PHC_185 | No text annotation | ||
| IL_7PHC_030 | No text annotation | ||
| IL_7PHC_031 | No text annotation | ||
| IL_7PHC_226 | C-loop | ||
| IL_7PHC_186 | Isolated non-canonical cWW pair | ||
| IL_7PHC_032 | No text annotation | ||
| IL_7PHC_187 | No text annotation | ||
| IL_7PHC_033 | No text annotation | ||
| IL_7PHC_227 | Double sheared with non-canonical cWW | ||
| IL_7PHC_034 | No text annotation | ||
| IL_7PHC_188 | Single stack bend | ||
| IL_7PHC_189 | Tandem non-canonical cWW pairs | ||
| IL_7PHC_035 | Single bulged U | ||
| IL_7PHC_036 | No text annotation | ||
| IL_7PHC_037 | Multiple bulged bases | ||
| IL_7PHC_038 | Kink-turn related | ||
| IL_7PHC_039 | No text annotation | ||
| IL_7PHC_040 | Isolated non-canonical cWW pair | ||
| IL_7PHC_190 | No text annotation | ||
| IL_7PHC_041 | No text annotation | ||
| IL_7PHC_042 | Major groove platform with extra cWW | ||
| IL_7PHC_228 | Isolated cWS basepair | ||
| IL_7PHC_043 | Tandem non-canonical cWW pairs | ||
| IL_7PHC_044 | Kink-turn | ||
| IL_7PHC_191 | No text annotation | ||
| IL_7PHC_045 | No text annotation | ||
| IL_7PHC_229 | Intercalated cWW | ||
| IL_7PHC_046 | Major groove platform; stack outside cWW | ||
| IL_7PHC_047 | C-loop | ||
| IL_7PHC_048 | UAA/GAN | ||
| IL_7PHC_049 | No text annotation | ||
| IL_7PHC_192 | tSH-tWH-tHS | ||
| IL_7PHC_050 | No text annotation | ||
| IL_7PHC_230 | No text annotation | ||
| IL_7PHC_051 | Other IL | ||
| IL_7PHC_193 | No text annotation | ||
| IL_7PHC_194 | tSH-tHH-tHS | ||
| IL_7PHC_052 | No text annotation | ||
| IL_7PHC_195 | Double sheared | ||
| IL_7PHC_053 | Double sheared with non-canonical cWW | ||
| IL_7PHC_054 | No text annotation | ||
| IL_7PHC_055 | Isolated non-canonical cWW with bulges | ||
| IL_7PHC_196 | Single bulged A | ||
| IL_7PHC_056 | No text annotation | ||
| IL_7PHC_057 | Isolated tWW turn | ||
| IL_7PHC_058 | Major groove platform; stack outside cWW | ||
| IL_7PHC_197 | No text annotation | ||
| IL_7PHC_059 | Intercalated tWH | ||
| IL_7PHC_060 | tSH-tSH-tHH-tHS | ||
| IL_7PHC_061 | Single bulged A | ||
| IL_7PHC_062 | Kink-turn related | ||
| IL_7PHC_063 | No text annotation | ||
| IL_7PHC_198 | Major groove intercalation | ||
| IL_7PHC_064 | Isolated non-canonical cWW with bulges | ||
| IL_7PHC_065 | No text annotation | ||
| IL_7PHC_231 | Major groove minor groove platform; mini C-loop | ||
| IL_7PHC_199 | No text annotation | ||
| IL_7PHC_066 | No text annotation | ||
| IL_7PHC_200 | UAA/GAN with extra stack | ||
| IL_7PHC_067 | Double sheared | ||
| IL_7PHC_068 | UAA/GAN related | ||
| IL_7PHC_069 | No text annotation | ||
| IL_7PHC_070 | Isolated non-canonical cWW pair | ||
| IL_7PHC_232 | No text annotation | ||
| IL_7PHC_071 | No text annotation | ||
| IL_7PHC_072 | No text annotation | ||
| IL_7PHC_073 | Single bulged U | ||
| IL_7PHC_074 | Minor groove platform | ||
| IL_7PHC_075 | Isolated tHS basepair with bulges | ||
| IL_7PHC_076 | Isolated non-canonical cWW pair | ||
| IL_7PHC_077 | Isolated non-canonical cWW pair | ||
| IL_7PHC_078 | No text annotation | ||
| IL_7PHC_079 | No text annotation | ||
| IL_7PHC_080 | No text annotation | ||
| IL_7PHC_081 | No text annotation | ||
| IL_7PHC_201 | Isolated non-canonical cWW pair | ||
| IL_7PHC_082 | No text annotation | ||
| IL_7PHC_202 | No text annotation | ||
| IL_7PHC_083 | No text annotation | ||
| IL_7PHC_084 | Isolated non-canonical cWW pair | ||
| IL_7PHC_085 | No text annotation | ||
| IL_7PHC_203 | No text annotation | ||
| IL_7PHC_086 | No text annotation | ||
| IL_7PHC_087 | Double sheared | ||
| IL_7PHC_088 | Isolated non-canonical cWW pair | ||
| IL_7PHC_204 | Single bulged U | ||
| IL_7PHC_089 | Major groove platform | ||
| IL_7PHC_090 | Major groove platform | ||
| IL_7PHC_091 | Major groove minor groove platform with extra cWW | ||
| IL_7PHC_092 | Triple sheared | ||
| IL_7PHC_093 | Major groove platform | ||
| IL_7PHC_094 | Isolated non-canonical cWW with bulges | ||
| IL_7PHC_095 | No text annotation | ||
| IL_7PHC_096 | No text annotation | ||
| IL_7PHC_205 | Major groove platform with intercalation | ||
| IL_7PHC_097 | Single bulged A | ||
| IL_7PHC_098 | No text annotation | ||
| IL_7PHC_099 | 7x6 Sarcin-Ricin with UU cWW pair; G-bulge | ||
| IL_7PHC_100 | C-loop | ||
| IL_7PHC_101 | No text annotation | ||
| IL_7PHC_206 | No text annotation | ||
| IL_7PHC_233 | UAA/GAN related, with intercalation | ||
| IL_7PHC_102 | No text annotation | ||
| IL_7PHC_207 | Multiple bulged bases | ||
| IL_7PHC_103 | No text annotation | ||
| IL_7PHC_104 | No text annotation | ||
| IL_7PHC_105 | Isolated non-canonical cWW with bulges | ||
| IL_7PHC_106 | No text annotation | ||
| IL_7PHC_208 | No text annotation | ||
| IL_7PHC_107 | No text annotation | ||
| IL_7PHC_108 | No text annotation | ||
| IL_7PHC_209 | Single stack bend | ||
| IL_7PHC_109 | Single bulged G, near cWW | ||
| IL_7PHC_110 | No text annotation | ||
| IL_7PHC_111 | No text annotation | ||
| IL_7PHC_210 | No text annotation | ||
| IL_7PHC_112 | Symmetric double minor groove platform | ||
| IL_7PHC_113 | Bacterial 5S Loop E | ||
| IL_7PHC_114 | Tandem non-canonical cWW pairs | ||
| IL_7PHC_115 | Single bulged A | ||
| IL_7PHC_116 | No text annotation | ||
| IL_7PHC_117 | Multiple bulged bases | ||
| IL_7PHC_118 | No text annotation | ||
| IL_7PHC_211 | No text annotation | ||
| IL_7PHC_119 | Isolated non-canonical cWW pair | ||
| IL_7PHC_234 | Multiple bulged bases | ||
| IL_7PHC_120 | No text annotation | ||
| IL_7PHC_235 | Triple non-canonical cWW pairs | ||
| IL_7PHC_121 | Tandem non-canonical cWW pairs with near WC pairs | ||
| IL_7PHC_122 | Isolated cWH basepair | ||
| IL_7PHC_123 | tWH-tWH-tHW-tHW | ||
| IL_7PHC_124 | No text annotation | ||
| IL_7PHC_125 | No text annotation | ||
| IL_7PHC_212 | No text annotation | ||
| IL_7PHC_126 | C-loop | ||
| IL_7PHC_213 | No text annotation | ||
| IL_7PHC_127 | Single stack bend | ||
| IL_7PHC_128 | Single bulged U | ||
| IL_7PHC_236 | No text annotation | ||
| IL_7PHC_129 | No text annotation | ||
| IL_7PHC_237 | No text annotation | ||
| IL_7PHC_130 | No text annotation | ||
| IL_7PHC_131 | No text annotation | ||
| IL_7PHC_214 | No text annotation | ||
| IL_7PHC_132 | tSH-tHW-tWW | ||
| IL_7PHC_133 | No text annotation | ||
| IL_7PHC_215 | No text annotation | ||
| IL_7PHC_134 | Single stack bend | ||
| IL_7PHC_135 | Isolated non-canonical cWW pair | ||
| IL_7PHC_136 | SSU/LSU pseudoknot | ||
| IL_7PHC_137 | Kink-turn related | ||
| IL_7PHC_138 | No text annotation | ||
| IL_7PHC_139 | No text annotation | ||
| IL_7PHC_140 | No text annotation | ||
| IL_7PHC_141 | No text annotation | ||
| IL_7PHC_142 | No text annotation | ||
| IL_7PHC_216 | No text annotation | ||
| IL_7PHC_238 | Isolated non-canonical cWW pair | ||
| IL_7PHC_239 | No text annotation | ||
| IL_7PHC_143 | No text annotation | ||
| IL_7PHC_217 | Major groove platform; stack outside cWW | ||
| IL_7PHC_144 | No text annotation | ||
| IL_7PHC_145 | Tandem non-canonical cWW pairs | ||
| IL_7PHC_146 | No text annotation | ||
| IL_7PHC_240 | Tandem non-canonical cWW pairs | ||
| IL_7PHC_218 | No text annotation | ||
| IL_7PHC_147 | Triple non-canonical cWW pairs | ||
| IL_7PHC_148 | Kink-turn | ||
| IL_7PHC_219 | Isolated non-canonical cWW pair | ||
| IL_7PHC_149 | No text annotation | ||
| IL_7PHC_150 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
| IL_7PHC_220 | 10x8 Sarcin-Ricin; G-bulge | ||
| IL_7PHC_151 | Single bulged A | ||
| IL_7PHC_221 | Isolated non-canonical cWW pair | ||
| IL_7PHC_152 | Single bulged G | ||
| IL_7PHC_153 | No text annotation | ||
| IL_7PHC_154 | No text annotation | ||
| IL_7PHC_155 | No text annotation | ||
| IL_7PHC_156 | No text annotation | ||
| IL_7PHC_157 | No text annotation | ||
| IL_7PHC_158 | Minor groove platform | ||
| IL_7PHC_159 | Single bulged A | ||
| IL_7PHC_160 | Isolated non-canonical cWW pair | ||
| IL_7PHC_161 | No text annotation | ||
| IL_7PHC_162 | No text annotation | ||
| IL_7PHC_163 | No text annotation | ||
| IL_7PHC_222 | No text annotation | ||
| IL_7PHC_164 | No text annotation | ||
| IL_7PHC_165 | 180 degree turn | ||
| IL_7PHC_166 | Double sheared | ||
| IL_7PHC_167 | No text annotation | ||
| IL_7PHC_168 | No text annotation | ||
| IL_7PHC_169 | No text annotation | ||
| IL_7PHC_170 | Isolated non-canonical cWW pair | ||
| IL_7PHC_171 | No text annotation | ||
| IL_7PHC_172 | Isolated non-canonical cWW pair | ||
| IL_7PHC_173 | Double sheared | ||
| IL_7PHC_174 | No text annotation | ||
| IL_7PHC_241 | Single stack bend | ||
| IL_7PHC_175 | Single stack bend | ||
| IL_7PHC_176 | Tandem non-canonical cWW pairs | ||
| IL_7PHC_177 | No text annotation | ||
| IL_7PHC_242 | No text annotation | ||
| IL_7PHC_223 | No text annotation | ||
| IL_7PHC_178 | Single stack bend | ||
| IL_7PHC_179 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7PHC_001 | No text annotation | ||
| J3_7PHC_035 | No text annotation | ||
| J3_7PHC_022 | No text annotation | ||
| J3_7PHC_023 | No text annotation | ||
| J3_7PHC_002 | No text annotation | ||
| J3_7PHC_003 | No text annotation | ||
| J3_7PHC_024 | No text annotation | ||
| J3_7PHC_025 | No text annotation | ||
| J3_7PHC_004 | No text annotation | ||
| J3_7PHC_005 | No text annotation | ||
| J3_7PHC_006 | No text annotation | ||
| J3_7PHC_007 | No text annotation | ||
| J3_7PHC_026 | No text annotation | ||
| J3_7PHC_027 | No text annotation | ||
| J3_7PHC_008 | No text annotation | ||
| J3_7PHC_028 | Kink-turn 3-way junction | ||
| J3_7PHC_036 | No text annotation | ||
| J3_7PHC_029 | No text annotation | ||
| J3_7PHC_009 | No text annotation | ||
| J3_7PHC_010 | No text annotation | ||
| J3_7PHC_037 | No text annotation | ||
| J3_7PHC_030 | No text annotation | ||
| J3_7PHC_011 | No text annotation | ||
| J3_7PHC_012 | No text annotation | ||
| J3_7PHC_031 | No text annotation | ||
| J3_7PHC_013 | No text annotation | ||
| J3_7PHC_014 | No text annotation | ||
| J3_7PHC_015 | No text annotation | ||
| J3_7PHC_016 | No text annotation | ||
| J3_7PHC_032 | No text annotation | ||
| J3_7PHC_033 | No text annotation | ||
| J3_7PHC_017 | No text annotation | ||
| J3_7PHC_038 | No text annotation | ||
| J3_7PHC_018 | No text annotation | ||
| J3_7PHC_039 | No text annotation | ||
| J3_7PHC_019 | No text annotation | ||
| J3_7PHC_020 | No text annotation | ||
| J3_7PHC_034 | No text annotation | ||
| J3_7PHC_021 | No text annotation | ||
| J4_7PHC_001 | No text annotation | ||
| J4_7PHC_002 | No text annotation | ||
| J4_7PHC_013 | No text annotation | ||
| J4_7PHC_003 | No text annotation | ||
| J4_7PHC_014 | No text annotation | ||
| J4_7PHC_004 | No text annotation | ||
| J4_7PHC_005 | No text annotation | ||
| J4_7PHC_006 | No text annotation | ||
| J4_7PHC_007 | No text annotation | ||
| J4_7PHC_008 | No text annotation | ||
| J4_7PHC_015 | No text annotation | ||
| J4_7PHC_009 | No text annotation | ||
| J4_7PHC_010 | No text annotation | ||
| J4_7PHC_011 | No text annotation | ||
| J4_7PHC_012 | No text annotation | ||
| J5_7PHC_001 | No text annotation | ||
| J5_7PHC_009 | No text annotation | ||
| J5_7PHC_002 | No text annotation | ||
| J5_7PHC_003 | No text annotation | ||
| J5_7PHC_011 | No text annotation | ||
| J5_7PHC_004 | No text annotation | ||
| J5_7PHC_005 | No text annotation | ||
| J5_7PHC_006 | No text annotation | ||
| J5_7PHC_007 | No text annotation | ||
| J5_7PHC_008 | No text annotation | ||
| J5_7PHC_010 | No text annotation | ||
| J6_7PHC_002 | No text annotation | ||
| J6_7PHC_001 | No text annotation | ||
| J7_7PHC_003 | No text annotation | ||
| J7_7PHC_004 | No text annotation | ||
| J7_7PHC_001 | No text annotation | ||
| J7_7PHC_002 | No text annotation |
Coloring options: